Literature DB >> 20431543

Intensity normalization improves color calling in SOLiD sequencing.

Hao Wu, Rafael A Irizarry, Héctor Corrada Bravo.   

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Year:  2010        PMID： 20431543      PMCID： PMC3142576          DOI： 10.1038/nmeth0510-336

Source DB:  PubMed          Journal:  Nat Methods        ISSN： 1548-7091            Impact factor:   28.547


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  5 in total

1.  Pyrobayes: an improved base caller for SNP discovery in pyrosequences.

Authors:  Aaron R Quinlan; Donald A Stewart; Michael P Strömberg; Gábor T Marth
Journal:  Nat Methods       Date:  2008-01-13       Impact factor: 28.547

2.  International genome project launched.

Authors:  Erika Check Hayden
Journal:  Nature       Date:  2008-01-24       Impact factor: 49.962

3.  Sequence and structural variation in a human genome uncovered by short-read, massively parallel ligation sequencing using two-base encoding.

Authors:  Kevin Judd McKernan; Heather E Peckham; Gina L Costa; Stephen F McLaughlin; Yutao Fu; Eric F Tsung; Christopher R Clouser; Cisyla Duncan; Jeffrey K Ichikawa; Clarence C Lee; Zheng Zhang; Swati S Ranade; Eileen T Dimalanta; Fiona C Hyland; Tanya D Sokolsky; Lei Zhang; Andrew Sheridan; Haoning Fu; Cynthia L Hendrickson; Bin Li; Lev Kotler; Jeremy R Stuart; Joel A Malek; Jonathan M Manning; Alena A Antipova; Damon S Perez; Michael P Moore; Kathleen C Hayashibara; Michael R Lyons; Robert E Beaudoin; Brittany E Coleman; Michael W Laptewicz; Adam E Sannicandro; Michael D Rhodes; Rajesh K Gottimukkala; Shan Yang; Vineet Bafna; Ali Bashir; Andrew MacBride; Can Alkan; Jeffrey M Kidd; Evan E Eichler; Martin G Reese; Francisco M De La Vega; Alan P Blanchard
Journal:  Genome Res       Date:  2009-06-22       Impact factor: 9.043

4.  BayesCall: A model-based base-calling algorithm for high-throughput short-read sequencing.

Authors:  Wei-Chun Kao; Kristian Stevens; Yun S Song
Journal:  Genome Res       Date:  2009-08-06       Impact factor: 9.043

5.  mRNA-Seq whole-transcriptome analysis of a single cell.

Authors:  Fuchou Tang; Catalin Barbacioru; Yangzhou Wang; Ellen Nordman; Clarence Lee; Nanlan Xu; Xiaohui Wang; John Bodeau; Brian B Tuch; Asim Siddiqui; Kaiqin Lao; M Azim Surani
Journal:  Nat Methods       Date:  2009-04-06       Impact factor: 28.547
  5 in total
  7 in total

Review 1.  Next-generation sequencing in the clinic: promises and challenges.

Authors:  Jiekun Xuan; Ying Yu; Tao Qing; Lei Guo; Leming Shi
Journal:  Cancer Lett       Date:  2012-11-19       Impact factor: 8.679

Review 2.  A beginners guide to SNP calling from high-throughput DNA-sequencing data.

Authors:  André Altmann; Peter Weber; Daniel Bader; Michael Preuss; Elisabeth B Binder; Bertram Müller-Myhsok
Journal:  Hum Genet       Date:  2012-08-11       Impact factor: 4.132

Review 3.  Genotype and SNP calling from next-generation sequencing data.

Authors:  Rasmus Nielsen; Joshua S Paul; Anders Albrechtsen; Yun S Song
Journal:  Nat Rev Genet       Date:  2011-06       Impact factor: 53.242

4.  Overcoming bias and systematic errors in next generation sequencing data.

Authors:  Margaret A Taub; Hector Corrada Bravo; Rafael A Irizarry
Journal:  Genome Med       Date:  2010-12-10       Impact factor: 11.117

Review 5.  Base-calling for next-generation sequencing platforms.

Authors:  Christian Ledergerber; Christophe Dessimoz
Journal:  Brief Bioinform       Date:  2011-01-18       Impact factor: 11.622

6.  Comprehensive transcriptomic study on horse gram (Macrotyloma uniflorum): De novo assembly, functional characterization and comparative analysis in relation to drought stress.

Authors:  Jyoti Bhardwaj; Rohit Chauhan; Mohit Kumar Swarnkar; Rakesh Kumar Chahota; Anil Kumar Singh; Ravi Shankar; Sudesh Kumar Yadav
Journal:  BMC Genomics       Date:  2013-09-23       Impact factor: 3.969

7.  Comparative Transcriptome Analysis of Chinary, Assamica and Cambod tea (Camellia sinensis) Types during Development and Seasonal Variation using RNA-seq Technology.

Authors:  Ajay Kumar; Vandna Chawla; Eshita Sharma; Pallavi Mahajan; Ravi Shankar; Sudesh Kumar Yadav
Journal:  Sci Rep       Date:  2016-11-17       Impact factor: 4.379
  7 in total

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