| Literature DB >> 20431262 |
Abstract
Herein, I describe pyridylamination for versatile analysis ofEntities:
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Year: 2010 PMID: 20431262 PMCID: PMC3417801 DOI: 10.2183/pjab.86.378
Source DB: PubMed Journal: Proc Jpn Acad Ser B Phys Biol Sci ISSN: 0386-2208 Impact factor: 3.493
Fig. 1Tagging of the reducing end of a sugar chain with 2-aminopyridine. The pyridylaminated sugar chain thus obtained is fluorescent. Under a UV-lamp a blue spot is observed. A spot containing >0.2 nmol of a PA-sugar chain can be detected by eye. R, sugar residues.
Fig. 2Two-dimensional paper electrophoresis of PA-sugar chains. An artificial mixture of PA-sugar chains was first separated by electrophoresis at pH 5.0 according to their molecular size. For the second dimension, PA-sugar chains were separated by borate electrophoresis according to binding ability of borate ions and sugar chains. After electrophoresis separated PA-sugar chains were visible under a UV-lamp. (Reprinted with slight modification from Biochem. Biophys. Res. Commun. 85, Hase S. et al. 257. Copyright (1978), with permission from Elsevier.)
Fig. 3A two-dimensional HPLC map of PA-sugar chains. PA-sugar chains were separated by two different separation principles; size-fractionation HPLC and reversed-phase HPLC. Open circles indicate the elution positions of N-linked sugar chains; closed circles indicate O-linked sugar chains. (Reprinted with slight modification from The Production & Technique. 51, Hase S. 39. Copyright (1999), with permission from the Association for the Advancement of Manufacturing & Technology.)
Fig. 4An elution profile of three isomers of Man8GlcNAc2-PA separated by reversed-phase HPLC. (Reprinted with slight modification from Anal. Biochem. 167, Hase S. et al. 321. Copyright (1987), with permission from Elsevier.)
Fig. 5A two-dimensional HPLC of twelve high mannose PA-sugar chains. An artificial mixture of twelve high mannose PA-sugar chains was first separated by size-fractionation HPLC and fractions corresponding to Man5GlcNAc2-PA (M5) ~ Man9-GlcNAc2-PA (M9) were collected. Each fraction obtained was next separated by reversed-phase HPLC. Addition of a sugar residue to a PA-sugar chain is represented by a vector on the two-dimensional HPLC map. Arrows in the figure indicate the replacement caused by the addition of the mannose residue indicated by bold faces in the structures. (Reprinted from Anal. Biochem. 167, Hase S. et al. 321. Copyright (1987), with permission from Elsevier.)
Fig. 6Conversion reactions for pyridylaminated sugar chains. (Reprinted from J. Biochem. 134, Takahashi, C. et al. 51. Copyright (2003), with permission from The Japanese Biochemical Society.)
Fig. 7Preparation of homogeneous sugar chain probes. Functional analysis using homogeneous sugar chains is feasible. (Reprinted from Sugar Chain Analysis by Pyridylamination for Carbo-diversity edited by Hase, S. Osaka University Press. Copyright (2009), with permission from Osaka University Press.)
Fig. 8HPLC of the pyridylaminated product (A) obtained from the oligopeptide and its acid hydrolysates (B). An oligopeptide from human blood coagulation factor IX was hydrazinolyzed and the products were pyridylaminated. Arrows indicate the elution positions; 1, pyridylaminated galactose; 2, pyridylaminated glucose; 3, pyridylaminated mannose; 4, pyridylaminated xylose. (Reprinted from J. Biochem. 104, Hase, S. et al. 867. Copyright (1988), with permission from The Japanese Biochemical Society.)
Fig. 9The structures of Xylα1-3Xylα1-3Glc found in human blood coagulation factor IX.
The structures of smaller N-linked sugar chains obtained from S-RNase
| Structure | Molar ratio (% of total) |
|---|---|
| G1cNAcβ1-4G1cNAc | 54.0 |
| Manβ1-4G1cNAcβ1-4G1cNAc | Not detected |
|
| Not detected |
|
| Not detected |
|
| 0.9 |
Substrate specificities of endo-β-mannosidase
| Substrate | Relative hydrolysis ratio (%) |
|---|---|
|
| 100 |
|
| |
|
| 48 |
|
| |
|
| 42 |
|
| |
| Manβ1-4G1cNAcβ1-4G1cNAc-PA | 4 |
|
| |
|
| <0.01 |
|
| |
|
| <0.01 |
|
| |
|
| <0.01 |
|
| |
|
| <0.01 |
|
| |
|
| <0.01 |
|
| |
|
| <0.01 |
|
| |
|
| 300 |
|
| |
| Manβ1-4G1cNAcβ1-4G1cNAc-Peptide | 9.8 |
|
| |
|
| <0.01 |
|
| |
|
| 86 |
|
| |
| Manβ1-4Manβ1-4Manβ1-4Manβ1-4Manβ1-4Man | <0.01 |
| <0.01 | |
| <0.01 | |
Cited from Reference [26)] with permission from The Japanese Biochemical Society.
Substrate specificity of fucosidase activity of endo-β-mannosidase II using PA-sugar chains obtained from xyloglycan
| Substrate | Relative hydrolysis rate (%) | |
|---|---|---|
| Endo-β-mannosidase II | Endo-β-mannosidase | |
|
| 100 | < 0.01 |
|
| 66 | < 0.01 |
|
| 40 | < 0.01 |
Cited from Reference [33)] with permission from The Japanese Biochemical Society.
Fig. 10Enzyme activity in the fractions separated by DEAE-cellulose chromatography of a crude enzyme fraction prepared from Japanese quail oviduct. A, p-nitrophenyl αd-mannoside (D) was used as a substrate; B, Manα1-6(Manα1-3)Manα1-6(Manα1-3)Manβ1-4GlcNAcβ1-4GlcNAc-PA (E, Man5GlcNAc2-PA); C, same as in B but in the presence of 1 mM Co2+. (Reprinted with slight modification from J. Biochem. 110, Hase, S. et al. 29. Copyright (1991), with permission from The Japanese Biochemical Society.)
Fig. 11Effects of the reducing end structures on the substrate specificities of cytosolic α-mannosidase from Japanese quail oviduct. Figures on the arrows indicate the relative initial hydrolysis rate. (Reprinted with slight modification from J. Biochem. 110, Oku, H. and Hase, S. 982. Copyright (1991), with permission from The Japanese Biochemical Society.)
Fig. 12Summary of the substrate specificities of cytosolic α-mannosidase purified from Japanese quail oviduct, bovine liver and hen oviduct.