Literature DB >> 20430068

An overview of the current status of eukaryote gene prediction strategies.

Roy D Sleator1.   

Abstract

As sequence data continues to be generated at a logarithmic rate our dependence on effective in silico gene prediction methods is also increasing. Herein, I review the current state of eukaryote gene prediction methods; their strengths, weaknesses and future directions. (c) 2010 Elsevier B.V. All rights reserved.

Mesh：

Year:  2010        PMID： 20430068     DOI： 10.1016/j.gene.2010.04.008

Source DB:  PubMed          Journal:  Gene        ISSN： 0378-1119            Impact factor:   3.688


  13 in total

Review 1.  Under the microscope: From pathogens to probiotics and back.

Authors:  Roy D Sleator
Journal:  Bioengineered       Date:  2015       Impact factor: 3.269

Review 2.  Emerging evidence for functional peptides encoded by short open reading frames.

Authors:  Shea J Andrews; Joseph A Rothnagel
Journal:  Nat Rev Genet       Date:  2014-02-11       Impact factor: 53.242

Review 3.  Small open reading frames: current prediction techniques and future prospect.

Authors:  Haoyu Cheng; Wai Soon Chan; Zhixiu Li; Dan Wang; Song Liu; Yaoqi Zhou
Journal:  Curr Protein Pept Sci       Date:  2011-09       Impact factor: 3.272

4.  The cancer-associated microprotein CASIMO1 controls cell proliferation and interacts with squalene epoxidase modulating lipid droplet formation.

Authors:  Maria Polycarpou-Schwarz; Matthias Groß; Pieter Mestdagh; Johanna Schott; Stefanie E Grund; Catherina Hildenbrand; Joachim Rom; Sebastian Aulmann; Hans-Peter Sinn; Jo Vandesompele; Sven Diederichs
Journal:  Oncogene       Date:  2018-05-16       Impact factor: 9.867

5.  Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species.

Authors:  Keith R Bradnam; Joseph N Fass; Anton Alexandrov; Paul Baranay; Michael Bechner; Inanç Birol; Sébastien Boisvert; Jarrod A Chapman; Guillaume Chapuis; Rayan Chikhi; Hamidreza Chitsaz; Wen-Chi Chou; Jacques Corbeil; Cristian Del Fabbro; T Roderick Docking; Richard Durbin; Dent Earl; Scott Emrich; Pavel Fedotov; Nuno A Fonseca; Ganeshkumar Ganapathy; Richard A Gibbs; Sante Gnerre; Elénie Godzaridis; Steve Goldstein; Matthias Haimel; Giles Hall; David Haussler; Joseph B Hiatt; Isaac Y Ho; Jason Howard; Martin Hunt; Shaun D Jackman; David B Jaffe; Erich D Jarvis; Huaiyang Jiang; Sergey Kazakov; Paul J Kersey; Jacob O Kitzman; James R Knight; Sergey Koren; Tak-Wah Lam; Dominique Lavenier; François Laviolette; Yingrui Li; Zhenyu Li; Binghang Liu; Yue Liu; Ruibang Luo; Iain Maccallum; Matthew D Macmanes; Nicolas Maillet; Sergey Melnikov; Delphine Naquin; Zemin Ning; Thomas D Otto; Benedict Paten; Octávio S Paulo; Adam M Phillippy; Francisco Pina-Martins; Michael Place; Dariusz Przybylski; Xiang Qin; Carson Qu; Filipe J Ribeiro; Stephen Richards; Daniel S Rokhsar; J Graham Ruby; Simone Scalabrin; Michael C Schatz; David C Schwartz; Alexey Sergushichev; Ted Sharpe; Timothy I Shaw; Jay Shendure; Yujian Shi; Jared T Simpson; Henry Song; Fedor Tsarev; Francesco Vezzi; Riccardo Vicedomini; Bruno M Vieira; Jun Wang; Kim C Worley; Shuangye Yin; Siu-Ming Yiu; Jianying Yuan; Guojie Zhang; Hao Zhang; Shiguo Zhou; Ian F Korf
Journal:  Gigascience       Date:  2013-07-22       Impact factor: 6.524

Review 6.  Biologically inspired intelligent decision making: a commentary on the use of artificial neural networks in bioinformatics.

Authors:  Timmy Manning; Roy D Sleator; Paul Walsh
Journal:  Bioengineered       Date:  2013-12-16       Impact factor: 3.269

Review 7.  Well-characterized sequence features of eukaryote genomes and implications for ab initio gene prediction.

Authors:  Ying Huang; Shi-Yi Chen; Feilong Deng
Journal:  Comput Struct Biotechnol J       Date:  2016-07-27       Impact factor: 7.271

8.  Ultra-deep sequencing of ribosome-associated poly-adenylated RNA in early Drosophila embryos reveals hundreds of conserved translated sORFs.

Authors:  Hongmei Li; Chuansheng Hu; Ling Bai; Hua Li; Mingfa Li; Xiaodong Zhao; Daniel M Czajkowsky; Zhifeng Shao
Journal:  DNA Res       Date:  2016-08-24       Impact factor: 4.458

9.  Evaluating high-throughput ab initio gene finders to discover proteins encoded in eukaryotic pathogen genomes missed by laboratory techniques.

Authors:  Stephen J Goodswen; Paul J Kennedy; John T Ellis
Journal:  PLoS One       Date:  2012-11-30       Impact factor: 3.240

10.  Genetic analysis of tolerance to boron toxicity in the legume Medicago truncatula.

Authors:  Paul Bogacki; David M Peck; Ramakrishnan M Nair; Jake Howie; Klaus H Oldach
Journal:  BMC Plant Biol       Date:  2013-03-27       Impact factor: 4.215
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.