Literature DB >> 20426164

Steerable features for statistical 3D dendrite detection.

German González1, François Aguet, François Fleuret, Michael Unser, Pascal Fua.   

Abstract

Most state-of-the-art algorithms for filament detection in 3-D image-stacks rely on computing the Hessian matrix around individual pixels and labeling these pixels according to its eigenvalues. This approach, while very effective for clean data in which linear structures are nearly cylindrical, loses its effectiveness in the presence of noisy data and irregular structures. In this paper, we show that using steerable filters to create rotationally invariant features that include higher-order derivatives and training a classifier based on these features lets us handle such irregular structures. This can be done reliably and at acceptable computational cost and yields better results than state-of-the-art methods.

Mesh:

Year:  2009        PMID: 20426164     DOI: 10.1007/978-3-642-04271-3_76

Source DB:  PubMed          Journal:  Med Image Comput Comput Assist Interv


  6 in total

1.  Automated reconstruction of dendritic and axonal trees by global optimization with geometric priors.

Authors:  Engin Türetken; Germán González; Christian Blum; Pascal Fua
Journal:  Neuroinformatics       Date:  2011-09

2.  Automated tracing of neurites from light microscopy stacks of images.

Authors:  Paarth Chothani; Vivek Mehta; Armen Stepanyants
Journal:  Neuroinformatics       Date:  2011-09

3.  Quantitative Multiscale Cell Imaging in Controlled 3D Microenvironments.

Authors:  Erik S Welf; Meghan K Driscoll; Kevin M Dean; Claudia Schäfer; Jun Chu; Michael W Davidson; Michael Z Lin; Gaudenz Danuser; Reto Fiolka
Journal:  Dev Cell       Date:  2016-02-22       Impact factor: 12.270

4.  Automation of Hessian-Based Tubularity Measure Response Function in 3D Biomedical Images.

Authors:  Oleksandr P Dzyubak; Erik L Ritman
Journal:  Int J Biomed Imaging       Date:  2011-02-22

5.  Rapid reconstruction of 3D neuronal morphology from light microscopy images with augmented rayburst sampling.

Authors:  Xing Ming; Anan Li; Jingpeng Wu; Cheng Yan; Wenxiang Ding; Hui Gong; Shaoqun Zeng; Qian Liu
Journal:  PLoS One       Date:  2013-12-31       Impact factor: 3.240

6.  An automated pipeline for bouton, spine, and synapse detection of in vivo two-photon images.

Authors:  Qiwei Xie; Xi Chen; Hao Deng; Danqian Liu; Yingyu Sun; Xiaojuan Zhou; Yang Yang; Hua Han
Journal:  BioData Min       Date:  2017-12-20       Impact factor: 2.522

  6 in total

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