Literature DB >> 20425558

Systems biology-based approaches to understand HIV-exposed uninfected women.

Adam Burgener1, J Sainsbury, F A Plummer, T Blake Ball.   

Abstract

Worldwide HIV infects women more frequently than men, and it is clear that not all exposed to HIV become infected. Several populations of HIV-exposed uninfected (EU) women have been identified, including discordant couples and sex workers. Understanding what provides natural protection in EU women is critical in vaccine or microbicide development. However, correlates of protection in these women are still unclear. Most studies have used classical methods, examining single genes or cellular factors, a mainstay for traditional immunobiology. This reductionist approach may be limited in the information it can provide. Novel technologies are now available that allow us to take a "systems biology" approach, which allows the study of a complex biological system and identifies factors that may provide protection against HIV infection. Herein we report developments in discovery-based systems biology approaches in EU women and how this broadens our understanding of natural protection against HIV-1.

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Year:  2010        PMID: 20425558     DOI: 10.1007/s11904-010-0039-3

Source DB:  PubMed          Journal:  Curr HIV/AIDS Rep        ISSN: 1548-3568            Impact factor:   5.071


  48 in total

1.  HIV envelope induces a cascade of cell signals in non-proliferating target cells that favor virus replication.

Authors:  Claudia Cicala; James Arthos; Sara M Selig; Glynn Dennis; Douglas A Hosack; Donald Van Ryk; Marion L Spangler; Tavis D Steenbeke; Prateeti Khazanie; Neil Gupta; Jun Yang; Marybeth Daucher; Richard A Lempicki; Anthony S Fauci
Journal:  Proc Natl Acad Sci U S A       Date:  2002-06-27       Impact factor: 11.205

2.  Cationic polypeptides are required for anti-HIV-1 activity of human vaginal fluid.

Authors:  Nitya Venkataraman; Amy L Cole; Pavel Svoboda; Jan Pohl; Alexander M Cole
Journal:  J Immunol       Date:  2005-12-01       Impact factor: 5.422

3.  Comparative study of three proteomic quantitative methods, DIGE, cICAT, and iTRAQ, using 2D gel- or LC-MALDI TOF/TOF.

Authors:  Wells W Wu; Guanghui Wang; Seung Joon Baek; Rong-Fong Shen
Journal:  J Proteome Res       Date:  2006-03       Impact factor: 4.466

4.  Resistance to HIV-1 infection in caucasian individuals bearing mutant alleles of the CCR-5 chemokine receptor gene.

Authors:  M Samson; F Libert; B J Doranz; J Rucker; C Liesnard; C M Farber; S Saragosti; C Lapoumeroulie; J Cognaux; C Forceille; G Muyldermans; C Verhofstede; G Burtonboy; M Georges; T Imai; S Rana; Y Yi; R J Smyth; R G Collman; R W Doms; G Vassart; M Parmentier
Journal:  Nature       Date:  1996-08-22       Impact factor: 49.962

5.  Resistance to HIV-1 infection among persistently seronegative prostitutes in Nairobi, Kenya.

Authors:  K R Fowke; N J Nagelkerke; J Kimani; J N Simonsen; A O Anzala; J J Bwayo; K S MacDonald; E N Ngugi; F A Plummer
Journal:  Lancet       Date:  1996-11-16       Impact factor: 79.321

6.  Interleukin-22 activates STAT3 and induces IL-10 by colon epithelial cells.

Authors:  Marehalli L Nagalakshmi; Anne Rascle; Sandra Zurawski; Satish Menon; Rene de Waal Malefyt
Journal:  Int Immunopharmacol       Date:  2004-05       Impact factor: 4.932

Review 7.  RNA-Seq: a revolutionary tool for transcriptomics.

Authors:  Zhong Wang; Mark Gerstein; Michael Snyder
Journal:  Nat Rev Genet       Date:  2009-01       Impact factor: 53.242

8.  Rho-mediated regulation of tight junctions during monocyte migration across the blood-brain barrier in HIV-1 encephalitis (HIVE).

Authors:  Yuri Persidsky; David Heilman; James Haorah; Marina Zelivyanskaya; Raisa Persidsky; Gregory A Weber; Hiroaki Shimokawa; Kozo Kaibuchi; Tsuneya Ikezu
Journal:  Blood       Date:  2006-02-14       Impact factor: 22.113

9.  Polymorphisms in IRF-1 associated with resistance to HIV-1 infection in highly exposed uninfected Kenyan sex workers.

Authors:  Terry Blake Ball; Hezhao Ji; Joshua Kimani; Paul McLaren; Crystal Marlin; Adrian V S Hill; Francis Allan Plummer
Journal:  AIDS       Date:  2007-05-31       Impact factor: 4.177

10.  Binding of alpha2ML1 to the low density lipoprotein receptor-related protein 1 (LRP1) reveals a new role for LRP1 in the human epidermis.

Authors:  Marie-Florence Galliano; Eve Toulza; Nathalie Jonca; Steven L Gonias; Guy Serre; Marina Guerrin
Journal:  PLoS One       Date:  2008-07-23       Impact factor: 3.240

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  7 in total

1.  Outcomes of a National Institute of Allergy and Infectious Diseases Workshop on understanding HIV-exposed but seronegative individuals.

Authors:  Janet M Young; Jim A Turpin; Runa Musib; Opendra K Sharma
Journal:  AIDS Res Hum Retroviruses       Date:  2011-01-15       Impact factor: 2.205

2.  Brief Report: The Relationship Between Injection Drug Use Risk Behaviors and Markers of Immune Activation.

Authors:  Sherry Deren; Charles M Cleland; Haekyung Lee; Saurabh Mehandru; Martin Markowitz
Journal:  J Acquir Immune Defic Syndr       Date:  2017-05-01       Impact factor: 3.731

Review 3.  Advances in HIV prevention for serodiscordant couples.

Authors:  Kathryn E Muessig; Myron S Cohen
Journal:  Curr HIV/AIDS Rep       Date:  2014-12       Impact factor: 5.071

Review 4.  Dissecting the HIV-specific immune response: a systems biology approach.

Authors:  Yoav Peretz; Cheryl Cameron; Rafick-Pierre Sékaly
Journal:  Curr Opin HIV AIDS       Date:  2012-01       Impact factor: 4.283

5.  Alternative effector-function profiling identifies broad HIV-specific T-cell responses in highly HIV-exposed individuals who remain uninfected.

Authors:  Marta Ruiz-Riol; Anuska Llano; Javier Ibarrondo; Jennifer Zamarreño; Karina Yusim; Vanessa Bach; Beatriz Mothe; Susana Perez-Alvarez; Marco A Fernandez; Gerard Requena; Michael Meulbroek; Ferran Pujol; Agathe Leon; Patricia Cobarsi; Bette T Korber; Bonaventura Clotet; Carmela Ganoza; Jorge Sanchez; Josep Coll; Christian Brander
Journal:  J Infect Dis       Date:  2014-09-23       Impact factor: 5.226

6.  Interplay between HIV-1 and Host Genetic Variation: A Snapshot into Its Impact on AIDS and Therapy Response.

Authors:  Raghavan Sampathkumar; Elnaz Shadabi; Ma Luo
Journal:  Adv Virol       Date:  2012-05-16

7.  Comparative expression profile of miRNA and mRNA in primary peripheral blood mononuclear cells infected with human immunodeficiency virus (HIV-1).

Authors:  Ankit Gupta; Pruthvi Nagilla; Hai-Son Le; Coulton Bunney; Courtney Zych; Anbupalam Thalamuthu; Ziv Bar-Joseph; Sinnakaruppan Mathavan; Velpandi Ayyavoo
Journal:  PLoS One       Date:  2011-07-28       Impact factor: 3.240

  7 in total

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