Literature DB >> 20420366

UV resonance Raman investigation of the conformations and lowest energy allowed electronic excited states of tri- and tetraalanine: charge transfer transitions.

Bhavya Sharma1, Sanford A Asher.   

Abstract

UV resonance Raman excitation profiles and Raman depolarization ratios were measured for trialanine and tetraalanine between 198 and 210 nm. Excitation within the pi --> pi* electronic transitions of the peptide bond results in UVRR spectra dominated by amide peptide bond vibrations. In addition to the resonance enhancement of the normal amide vibrations, we find enhancement of the symmetric terminal COO(-) vibration. The Ala(3) UVRR AmIII(3) band frequencies indicate that poly-proline II and 2.5(1) helix conformations and type II turns are present in solution. We also find that the conformation of the interior peptide bond of Ala(4) is predominantly poly-proline-II-like. The Raman excitation profiles of both Ala(3) and Ala(4) reveal a charge transfer electronic transition at 202 nm, where electron transfer occurs from the terminal nonbonding carboxylate orbital to the adjacent peptide bond pi* orbital. Raman depolarization ratio measurements support this assignment. An additional electronic transition is found in Ala(4) at 206 nm.

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Year:  2010        PMID: 20420366      PMCID: PMC2890231          DOI: 10.1021/jp100428n

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  32 in total

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2.  Unusual compactness of a polyproline type II structure.

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Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-05       Impact factor: 11.205

3.  Time-domain calculations of the infrared and polarized Raman spectra of tetraalanine in aqueous solution.

Authors:  Hajime Torii
Journal:  J Phys Chem B       Date:  2007-04-19       Impact factor: 2.991

4.  UV Resonance Raman Elucidation of the Terminal and Internal Peptide Bond Conformations of Crystalline and Solution Oligoglycines.

Authors:  Sergei V Bykov; Sanford A Asher
Journal:  J Phys Chem Lett       Date:  2010-11-30       Impact factor: 6.475

5.  Tripeptides adopt stable structures in water. A combined polarized visible Raman, FTIR, and VCD spectroscopy study.

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Journal:  J Am Chem Soc       Date:  2002-12-04       Impact factor: 15.419

6.  Structure and dynamics of the homologous series of alanine peptides: a joint molecular dynamics/NMR study.

Authors:  Jürgen Graf; Phuong H Nguyen; Gerhard Stock; Harald Schwalbe
Journal:  J Am Chem Soc       Date:  2007-02-07       Impact factor: 15.419

7.  UV resonance Raman determination of polyproline II, extended 2.5(1)-helix, and beta-sheet Psi angle energy landscape in poly-L-lysine and poly-L-glutamic acid.

Authors:  Aleksandr V Mikhonin; Nataliya S Myshakina; Sergei V Bykov; Sanford A Asher
Journal:  J Am Chem Soc       Date:  2005-06-01       Impact factor: 15.419

8.  Stable conformations of tripeptides in aqueous solution studied by UV circular dichroism spectroscopy.

Authors:  Fatma Eker; Kai Griebenow; Reinhard Schweitzer-Stenner
Journal:  J Am Chem Soc       Date:  2003-07-09       Impact factor: 15.419

9.  Vibrational Raman optical activity characterization of poly(l-proline) II helix in alanine oligopeptides.

Authors:  Iain H McColl; Ewan W Blanch; Lutz Hecht; Neville R Kallenbach; Laurence D Barron
Journal:  J Am Chem Soc       Date:  2004-04-28       Impact factor: 15.419

10.  Peptide secondary structure folding reaction coordinate: correlation between uv raman amide III frequency, Psi Ramachandran angle, and hydrogen bonding.

Authors:  Aleksandr V Mikhonin; Sergei V Bykov; Nataliya S Myshakina; Sanford A Asher
Journal:  J Phys Chem B       Date:  2006-02-02       Impact factor: 2.991

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  5 in total

1.  Intrinsic α-helical and β-sheet conformational preferences: a computational case study of alanine.

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2.  UV resonance Raman finds peptide bond-Arg side chain electronic interactions.

Authors:  Bhavya Sharma; Sanford A Asher
Journal:  J Phys Chem B       Date:  2011-03-16       Impact factor: 2.991

Review 3.  UV resonance Raman investigations of peptide and protein structure and dynamics.

Authors:  Sulayman A Oladepo; Kan Xiong; Zhenmin Hong; Sanford A Asher; Joseph Handen; Igor K Lednev
Journal:  Chem Rev       Date:  2012-02-15       Impact factor: 60.622

4.  Molecular dynamics-derived rotamer libraries for d-amino acids within homochiral and heterochiral polypeptides.

Authors:  Matthew Carter Childers; Clare-Louise Towse; Valerie Daggett
Journal:  Protein Eng Des Sel       Date:  2018-06-01       Impact factor: 1.650

5.  Structure and Function of Tryptophan-Tyrosine Dyads in Biomimetic β Hairpins.

Authors:  Tyler G McCaslin; Cynthia V Pagba; San-Hui Chi; Hyea J Hwang; James C Gumbart; Joseph W Perry; Cristina Olivieri; Fernando Porcelli; Gianluigi Veglia; Zhanjun Guo; Miranda McDaniel; Bridgette A Barry
Journal:  J Phys Chem B       Date:  2019-03-19       Impact factor: 2.991

  5 in total

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