Literature DB >> 20418660

Application of nanoscale secondary ion mass spectrometry to plant cell research.

Matt R Kilburn1, David L Jones, Peta L Clode, John B Cliff, Elizabeth A Stockdale, Anke M Herrmann, Daniel V Murphy.   

Abstract

Imaging resource flow in soil-plant systems remains central to understanding plant development and interactions with the environment. Typically, subcellular resolution is required to fully elucidate the compartmentation, behavior, and mode of action of organic compounds and mineral elements within plants. For many situations this has been limited by the poor spatial resolution of imaging techniques and the inability to undertake studies in situ. Here we demonstrate the potential of Nanoscale Secondary Ion Mass Spectrometry (NanoSIMS), which is capable of the quantitative high-resolution spatial imaging of stable isotopes (e.g. (12) C, (13) C, (14) N, (15) N, (16) O, (18) O, (31) P, (34) S) within intact plant-microbial-soil systems. We present examples showing how the approach can be used to investigate competition for (15) N-labeled nitrogen compounds between plant roots and soil microorganisms living in the rhizosphere and the spatial imaging of (31) P in roots. We conclude that NanoSIMS has great potential to elucidate the flow of isotopically-labeled compounds in complex media (e.g. soil) and opens up countless new opportunities for studying plant responses to abiotic stress (e.g. (18) O3, elevated (13) CO2), signal exchange, nutrient flow and plant-microbial interactions.

Entities:  

Year:  2010        PMID: 20418660      PMCID: PMC3001583          DOI: 10.4161/psb.5.6.11775

Source DB:  PubMed          Journal:  Plant Signal Behav        ISSN: 1559-2316


  10 in total

Review 1.  Progress in analytical imaging of the cell by dynamic secondary ion mass spectrometry (SIMS microscopy).

Authors:  Jean-Luc Guerquin-Kern; Ting-Di Wu; Carmen Quintana; Alain Croisy
Journal:  Biochim Biophys Acta       Date:  2005-08-05

2.  Quantitative imaging of nitrogen fixation by individual bacteria within animal cells.

Authors:  Claude P Lechene; Yvette Luyten; Gregory McMahon; Daniel L Distel
Journal:  Science       Date:  2007-09-14       Impact factor: 47.728

3.  NanoSIMS 50 elucidation of the natural element composition in structures of cyanobacteria and their exposure to halogen compounds.

Authors:  T Eybe; J N Audinot; T Bohn; C Guignard; H N Migeon; L Hoffmann
Journal:  J Appl Microbiol       Date:  2008-09-08       Impact factor: 3.772

4.  In situ mapping of nutrient uptake in the rhizosphere using nanoscale secondary ion mass spectrometry.

Authors:  Peta L Clode; Matt R Kilburn; David L Jones; Elizabeth A Stockdale; John B Cliff; Anke M Herrmann; Daniel V Murphy
Journal:  Plant Physiol       Date:  2009-10-07       Impact factor: 8.340

5.  A novel method for the study of the biophysical interface in soils using nano-scale secondary ion mass spectrometry.

Authors:  Anke M Herrmann; Peta L Clode; Ian R Fletcher; Naoise Nunan; Elizabeth A Stockdale; Anthony G O'Donnell; Daniel V Murphy
Journal:  Rapid Commun Mass Spectrom       Date:  2007       Impact factor: 2.419

6.  Linking microbial phylogeny to metabolic activity at the single-cell level by using enhanced element labeling-catalyzed reporter deposition fluorescence in situ hybridization (EL-FISH) and NanoSIMS.

Authors:  Sebastian Behrens; Tina Lösekann; Jennifer Pett-Ridge; Peter K Weber; Wing-On Ng; Bradley S Stevenson; Ian D Hutcheon; David A Relman; Alfred M Spormann
Journal:  Appl Environ Microbiol       Date:  2008-03-21       Impact factor: 4.792

7.  Fixation and fate of C and N in the cyanobacterium Trichodesmium using nanometer-scale secondary ion mass spectrometry.

Authors:  Juliette A Finzi-Hart; Jennifer Pett-Ridge; Peter K Weber; Radu Popa; Stewart J Fallon; Troy Gunderson; Ian D Hutcheon; Kenneth H Nealson; Douglas G Capone
Journal:  Proc Natl Acad Sci U S A       Date:  2009-03-30       Impact factor: 11.205

8.  A single-cell view on the ecophysiology of anaerobic phototrophic bacteria.

Authors:  Niculina Musat; Hannah Halm; Bärbel Winterholler; Peter Hoppe; Sandro Peduzzi; Francois Hillion; Francois Horreard; Rudolf Amann; Bo B Jørgensen; Marcel M M Kuypers
Journal:  Proc Natl Acad Sci U S A       Date:  2008-11-12       Impact factor: 11.205

9.  High-resolution quantitative imaging of mammalian and bacterial cells using stable isotope mass spectrometry.

Authors:  Claude Lechene; Francois Hillion; Greg McMahon; Douglas Benson; Alan M Kleinfeld; J Patrick Kampf; Daniel Distel; Yvette Luyten; Joseph Bonventre; Dirk Hentschel; Kwon Moo Park; Susumu Ito; Martin Schwartz; Gilles Benichou; Georges Slodzian
Journal:  J Biol       Date:  2006

10.  Simultaneous analysis of microbial identity and function using NanoSIMS.

Authors:  Tianlun Li; Ting-Di Wu; Laurent Mazéas; Laurent Toffin; Jean-Luc Guerquin-Kern; Gérard Leblon; Théodore Bouchez
Journal:  Environ Microbiol       Date:  2007-11-20       Impact factor: 5.491

  10 in total
  10 in total

1.  Exploring fungus-plant N transfer in a tripartite ant-plant-fungus mutualism.

Authors:  Céline Leroy; Alain Jauneau; Yves Martinez; Armelle Cabin-Flaman; David Gibouin; Jérôme Orivel; Nathalie Séjalon-Delmas
Journal:  Ann Bot       Date:  2017-09-01       Impact factor: 4.357

2.  Light Sheet Microscopy Imaging of Light Absorption and Photosynthesis Distribution in Plant Tissue.

Authors:  Mads Lichtenberg; Erik C L Trampe; Thomas C Vogelmann; Michael Kühl
Journal:  Plant Physiol       Date:  2017-08-18       Impact factor: 8.340

Review 3.  The subcellular distribution of small molecules: from pharmacokinetics to synthetic biology.

Authors:  Nan Zheng; Hobart Ng Tsai; Xinyuan Zhang; Gus R Rosania
Journal:  Mol Pharm       Date:  2011-08-15       Impact factor: 4.939

Review 4.  Innovative methods in soil phosphorus research: A review.

Authors:  Jens Kruse; Marion Abraham; Wulf Amelung; Christel Baum; Roland Bol; Oliver Kühn; Hans Lewandowski; Jörg Niederberger; Yvonne Oelmann; Christopher Rüger; Jakob Santner; Meike Siebers; Nina Siebers; Marie Spohn; Johan Vestergren; Angela Vogts; Peter Leinweber
Journal:  J Plant Nutr Soil Sci (1999)       Date:  2015-01-12       Impact factor: 2.426

5.  Use of stable isotope-tagged thymidine and multi-isotope imaging mass spectrometry (MIMS) for quantification of human cardiomyocyte division.

Authors:  Jessie W Yester; Honghai Liu; Frank Gyngard; Niyatie Ammanamanchi; Kathryn C Little; Dawn Thomas; Mara L G Sullivan; Sean Lal; Matthew L Steinhauser; Bernhard Kühn
Journal:  Nat Protoc       Date:  2021-02-24       Impact factor: 13.491

6.  Exploring the transfer of recent plant photosynthates to soil microbes: mycorrhizal pathway vs direct root exudation.

Authors:  Christina Kaiser; Matt R Kilburn; Peta L Clode; Lucia Fuchslueger; Marianne Koranda; John B Cliff; Zakaria M Solaiman; Daniel V Murphy
Journal:  New Phytol       Date:  2014-11-10       Impact factor: 10.323

7.  Zinc and Cadmium Mapping in the Apical Shoot and Hypocotyl Tissues of Radish by High-Resolution Secondary Ion Mass Spectrometry (NanoSIMS) after Short-Term Exposure to Metal Contamination.

Authors:  Gabrijel Ondrasek; Peta L Clode; Matt R Kilburn; Paul Guagliardo; Davor Romić; Zed Rengel
Journal:  Int J Environ Res Public Health       Date:  2019-01-29       Impact factor: 3.390

Review 8.  Determination of phosphorus compounds in plant tissues: from colourimetry to advanced instrumental analytical chemistry.

Authors:  Dorota Wieczorek; Beata Żyszka-Haberecht; Anna Kafka; Jacek Lipok
Journal:  Plant Methods       Date:  2022-02-21       Impact factor: 4.993

Review 9.  Optimisation of root traits to provide enhanced ecosystem services in agricultural systems: A focus on cover crops.

Authors:  Marcus Griffiths; Benjamin M Delory; Vanessica Jawahir; Kong M Wong; G Cody Bagnall; Tyler G Dowd; Dmitri A Nusinow; Allison J Miller; Christopher N Topp
Journal:  Plant Cell Environ       Date:  2022-01-24       Impact factor: 7.947

10.  Advancements in the application of NanoSIMS and Raman microspectroscopy to investigate the activity of microbial cells in soils.

Authors:  Stephanie A Eichorst; Florian Strasser; Tanja Woyke; Arno Schintlmeister; Michael Wagner; Dagmar Woebken
Journal:  FEMS Microbiol Ecol       Date:  2015-08-30       Impact factor: 4.194

  10 in total

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