Literature DB >> 20414896

Analysis of ancient human genomes: using next generation sequencing, 20-fold coverage of the genome of a 4,000-year-old human from Greenland has been obtained.

Beth Shapiro1, Michael Hofreiter.   

Abstract

High-capacity sequencing technologies have dramatically reduced both the cost and time required to generate complete human genome sequences. Besides expanding our knowledge about existing diversity, the nature of these technologies makes it possible to extend knowledge in yet another dimension: time. Recently, the complete genome sequence of a 4,000-year-old human from the Saqqaq culture of Greenland was determined to 20-fold coverage. These data make it possible to investigate the population affinities of this enigmatic culture and, by identifying several phenotypic traits of this individual, provide a limited glimpse into how these people may have looked. While undoubtedly a milestone in ancient DNA research, the cost to generate an ancient genome, even from such an exceptionally preserved specimen, remains out of reach for most. Nonetheless, recently developed DNA capture methods, already applied to Neanderthal and fossil human mitochondrial DNA, may soon make large-scale genome-wide analysis of ancient human diversity a reality, providing a fresh look at human population history.

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Year:  2010        PMID: 20414896     DOI: 10.1002/bies.201000026

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  9 in total

Review 1.  Ancestry of modern Europeans: contributions of ancient DNA.

Authors:  Marie Lacan; Christine Keyser; Eric Crubézy; Bertrand Ludes
Journal:  Cell Mol Life Sci       Date:  2012-10-11       Impact factor: 9.261

Review 2.  Sequencing technologies and genome sequencing.

Authors:  Chandra Shekhar Pareek; Rafal Smoczynski; Andrzej Tretyn
Journal:  J Appl Genet       Date:  2011-06-23       Impact factor: 3.240

3.  Storage and shipping of tissue samples for DNA analyses: A case study on earthworms.

Authors:  Daniela Straube; Anita Juen
Journal:  Eur J Soil Biol       Date:  2013-07       Impact factor: 2.846

4.  Next Generation Sequencing of Ancient DNA: Requirements, Strategies and Perspectives.

Authors:  Michael Knapp; Michael Hofreiter
Journal:  Genes (Basel)       Date:  2010-07-28       Impact factor: 4.096

5.  High-throughput sequencing of a South American Amerindian.

Authors:  André M Ribeiro-dos-Santos; Jorge Estefano Santana de Souza; Renan Almeida; Dayse O Alencar; Maria Silvanira Barbosa; Leonor Gusmão; Wilson A Silva; Sandro J de Souza; Artur Silva; Ândrea Ribeiro-dos-Santos; Sylvain Darnet; Sidney Santos
Journal:  PLoS One       Date:  2013-12-30       Impact factor: 3.240

6.  When data sharing gets close to 100%: what human paleogenetics can teach the open science movement.

Authors:  Paolo Anagnostou; Marco Capocasa; Nicola Milia; Emanuele Sanna; Cinzia Battaggia; Daniela Luzi; Giovanni Destro Bisol
Journal:  PLoS One       Date:  2015-03-23       Impact factor: 3.240

Review 7.  Novel Substrates as Sources of Ancient DNA: Prospects and Hurdles.

Authors:  Eleanor Joan Green; Camilla F Speller
Journal:  Genes (Basel)       Date:  2017-07-13       Impact factor: 4.096

Review 8.  Genomic approaches to trace the history of human brain evolution with an emerging opportunity for transposon profiling of ancient humans.

Authors:  Yilan Wang; Boxun Zhao; Jaejoon Choi; Eunjung Alice Lee
Journal:  Mob DNA       Date:  2021-10-18

9.  Whole-exome sequencing supports genetic heterogeneity in childhood apraxia of speech.

Authors:  Elizabeth A Worthey; Gordana Raca; Jennifer J Laffin; Brandon M Wilk; Jeremy M Harris; Kathy J Jakielski; David P Dimmock; Edythe A Strand; Lawrence D Shriberg
Journal:  J Neurodev Disord       Date:  2013-10-02       Impact factor: 4.025

  9 in total

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