| Literature DB >> 20413710 |
Makiko Kunogi1, Masatoshi Kurihara, Takako Shigihara Ikegami, Toshiyuki Kobayashi, Noriko Shindo, Toshio Kumasaka, Yoko Gunji, Mika Kikkawa, Shin-ichiro Iwakami, Okio Hino, Kazuhisa Takahashi, Kuniaki Seyama.
Abstract
BACKGROUND: Birt-Hogg-Dubé syndrome (BHDS) is an inherited autosomal genodermatosis characterised by fibrofolliculomas of the skin, renal tumours and multiple lung cysts. Genetic studies have disclosed that the clinical picture as well as responsible germline FLCN mutations are diverse.Entities:
Mesh:
Substances:
Year: 2010 PMID: 20413710 PMCID: PMC2981024 DOI: 10.1136/jmg.2009.070565
Source DB: PubMed Journal: J Med Genet ISSN: 0022-2593 Impact factor: 6.318
The results of mutation analysis of the FLCN gene
| Patient | Location | Mutation | Predicted results |
| JBR4 | Exon 10 | c.1063-10_1065delTCTTGTTTAGGTC | Exon 10 skip (38 amino acid in-frame deletion) |
| JBR7 | Exon 10 | c.1063-10_1065delTCTTGTTTAGGTC | Exon 10 skip (38 amino acid in-frame deletion) |
| JBR8 | Exon 13 | c.1533G→A (W511X) | Protein truncation |
| JBR9 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR10 | Exon 7 | c.769_771delTCC | In-frame deletion |
| JBR11 | Exon 9 | c.887C→A (S296X) | Protein truncation |
| JBR12 | Exon 13 | c.1533_1536delGATG | Frame shift, protein truncation |
| JBR13 | Exon 13 | c.1433-1G→T | Exon 13 skip (frame shift, protein truncation) |
| JBR14 | Exon 9 ∼ 14 | c.872-?_c.1740+?del | Protein truncation |
| JBR15 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR16 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR17 | Exon 10 | c.1063-2A→G | Exon 10 skip (38 amino acid in-frame deletion) |
| JBR18 | Exon 14 ∼ | c.1539-?_c.1740+?del | Protein truncation |
| JBR19 | Exon 6 | c.[564_565dupCC;566_577delTGCTGGGGAAGG] | Frame shift, protein truncation |
| JBR20 | Exon 5 | c.328C→T (Q110X) | Protein truncation |
| JBR21 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR22 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR23 | Exon 6 | c.397-7_399delCCTCCAGGTC | Exon 6 skip (74 amino acid in-frame deletion) |
| JBR24 | Exon 13 | c.1533_1536delGATG | Frame shift, protein truncation |
| JBR25 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR26 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR27 | Exon 12 | c.1347_1353dupCCACCCT | Frame shift, protein truncation |
| JBR28 | Exon 9 | c.997_998dupTC | Frame shift, protein truncation |
| JBR29 | Exon 11 | c.1177-5_1177-3delCTC | Exon 11 skip (frame shift, protein truncation) |
| JBR30 | Exon 7 | c.769-771delTCC | In-frame deletion |
Figure 1Analysis of the FLCN haploid copy number. FLCN copy number status (mean±SD) was determined by quantitative polymerase chain reaction (qPCR). The representative data from exon 8 to exon 14 of the FLCN gene, and the data of two reference genes, ZNF80 and GPR15, in two patients (JBR14 and JBR18) and normal genomic DNA (calibrator) are presented. JBR14 showed the gene dosage value close to 0.5 in 6 exons (exons 9 to 14), suggesting a large genomic deletion encompassing from exon 9 to exon 14. On the other hand, JBR18 showed the gene dosage value close to 0.5 only in exon 14, suggesting a genomic deletion of exon 14 and 3′-untranslated region. The gene dosage values of the remaining exons (exons 1 to 7) for JBR14 and JBR18 were close to 1.0 (data not shown).
Figure 2Southern blot analysis of the FLCN gene. Genomic DNA from two patients (JBR14 and JBR18) and two normal controls (N1 and N2) was digested with either BamHI or EcoRI and Southern blotting was performed using P-labelled hBHD cDNA probe25 (panel A). Size marker (Mr) was shown on the right. Distribution of 14 exons of the FLCN gene, restriction sites of BamHI and EcoRI, and expected length of fragment are schematically presented (panel B). The location of an undetermined restriction site which is involved in the generation of an aberrant band is indicated by a dotted arrow. Aberrant bands (a, b, c, d, and e) expected to be generated with a large genomic deletion (a thick shaded line) in JBR14 and JBR18 are depicted with the addition of a dotted line.
Clinical data of the 30 subjects who carry pathogenic FLCN mutation
| Patient | Sex | Age | No. and location of PTX episodes | Skin lesion | Renal disease | Family history of PTX | Family history of skin lesion | Family history of renal disease | Medical history | Smoking history |
| JBR1(B1) | F | 23(30) | L(1) R(1) | None | None | Yes | No | No | Endometriosis, PCOS, ovarian cyst, lipoma | Never |
| JBR2(B2) | F | 16(38) | L(3) R(3) | None | None | Yes | No | No | Myoma of the uterus, | Ex-smoker 2.2 pack-years |
| JBR3(B3) | F | 25(40) | L(3)R(2) | None | None | Yes | No | Yes | None | Never |
| JBR4 | F | 49(80) | R1 | None | None | No | No | No | None | Never |
| JBR5(B6) | F | 35(37) | L(1)R(1) | None | None | Yes | No | No | Myoma of the uterus | Never |
| JBR6(B7) | F | 28(38) | L(2)R(1) | None | None | Yes | No | Yes | Vocal cord nodules, myoma of the uterus, carcinoma of the thyroid gland | Ex-smoker 0.6 pack-years |
| JBR7 | F | 52(53) | L(3) | None | None | Yes | No | No | Breast carcinoma | Never |
| JBR8 | M | 33(33) | R(1) | None | None | No | No | No | Non-functioning adenoma of adrenal gland | Never |
| JBR9 | F | (31) | Never (lung cyst) | None | None | No | No | No | None | Never |
| JBR10 | F | 78(85) | L(1)R(1) | None | None | No | No | No | Colon cancer | Never |
| JBR11 | M | 35(38) | R(2) | Nose | None | Yes | No | No | None | Never |
| JBR12 | F | 57(68) | L(1)R(2) | Face, neck | Hydronephrosis (L) | No | No | No | Endometriosis | Never |
| JBR13 | F | 27(32) | L(2)R(2) | None | None | Yes | Yes | No | None | Never |
| JBR14 | F | 27(31) | L(1)R(6) | None | None | No | No | No | None | Never |
| JBR15 | F | 38(43) | L(1)R(2) | None | AML(R) | No | No | No | None | Ex-smoker 2.7 pack-years |
| JBR16 | F | 26(54) | L(4) | FFs | None | Yes | Yes | No | None | Never |
| JBR17 | M | 34(34) | L(5)R(2) | None | None | No | No | No | None | Ex-smoker 18.8 pack-years |
| JBR18 | F | 16(46) | L(4)R(4) | None | None | Yes | No | No | None | Never |
| JBR19 | F | unknown(53) | no details (2) | None | Cancer | Yes | No | No | None | Never |
| JBR20 | F | 26(38) | L(2)R(2) | None | None | No | No | No | None | Ex-smoker 7.5 pack-years |
| JBR21 | F | 20(34) | L(1)R(3) | Chest | None | Yes | No | No | Endometriosis | Never |
| JBR22 | F | 41(59) | R(1) | Face, neck | None | Yes | No | No | None | Never |
| JBR23 | M | 25(40) | L(1)R(2) | None | None | Yes | No | No | None | Never |
| JBR24 | F | 52(52) | L(1) | None | None | No | No | No | None | Never |
| JBR25 | M | 29(32) | L(1)R(3) | None | None | Yes | No | No | None | Never |
| JBR26 | F | 21(23) | L(2)R(2) | None | None | No | No | No | None | Never |
| JBR27 | F | 65(66) | R(2) | None | None | Yes | No | No | None | Never |
| JBR28 | F | 24(44) | L(2)R(1) | None | None | Yes | No | No | None | Never |
| JBR29 | F | 51(53) | L(1)R(1) | Neck | None | Yes | Yes | No | None | Ex-smoker 4.7 pack-years |
| JBR30 | M | 29(66) | L(3)R(3) | Seborrhoeic keratosis | None | Yes | No | No | Gallbladder polyp | Never |
JBR16 had FFs on the nose and JBR30 had seborrhoeic keratosis on the face and the neck.
Family history was obtained by an interview with the patient. FLCN mutation status of the family member was undetermined since they did not wish the genetic testing.
The description in parentheses indicates the correspondence of the patient whose clinical data were already reported in the previous study.10
Age (years) at the first PTX is shown. Age at the enrolment in this study is indicated in parenthesis.
The number of pneumothorax episode in parentheses.
The detailed clinical pictures of this case are described elsewhere.18
The locations of skin papules observed are indicated if the patient has no skin biopsy.
Only medical histories considered to be relevant for BHDS are listed.
FFs, fibrofolliculomas; L, left sided; PCOS, polycystic ovarian syndrome; PTX, pneumothorax; R, right sided.
Figure 3Comparison of FLCN germline mutation spectrum reported by the National Cancer Institute (NCI) group and the current study group. The upper half shows the result of NCI group19 20 while the lower half is the result of the current study (combined with the previously reported result10 and the present study). Symbols: red, single nucleotide substitution; blue, deletion and/or insertion; green, splice site mutation; the bars on the bottom, genomic deletion; a star, one patient.