Literature DB >> 20412574

Challenges in experimental data integration within genome-scale metabolic models.

Pierre-Yves Bourguignon1, Areejit Samal, François Képès, Jürgen Jost, Olivier C Martin.   

Abstract

A report of the meeting "Challenges in experimental data integration within genome-scale metabolic models", Institut Henri Poincaré, Paris, October 10-11 2009, organized by the CNRS-MPG joint program in Systems Biology.

Entities:  

Year:  2010        PMID： 20412574      PMCID： PMC2865480          DOI： 10.1186/1748-7188-5-20

Source DB:  PubMed          Journal:  Algorithms Mol Biol        ISSN： 1748-7188            Impact factor:   1.405


  25 in total

1.  Comparison of network-based pathway analysis methods.

Authors:  Jason A Papin; Joerg Stelling; Nathan D Price; Steffen Klamt; Stefan Schuster; Bernhard O Palsson
Journal:  Trends Biotechnol       Date:  2004-08       Impact factor: 19.536

Review 2.  High-throughput phenomics: experimental methods for mapping fluxomes.

Authors:  Uwe Sauer
Journal:  Curr Opin Biotechnol       Date:  2004-02       Impact factor: 9.740

3.  Global reconstruction of the human metabolic network based on genomic and bibliomic data.

Authors:  Natalie C Duarte; Scott A Becker; Neema Jamshidi; Ines Thiele; Monica L Mo; Thuy D Vo; Rohith Srivas; Bernhard Ø Palsson
Journal:  Proc Natl Acad Sci U S A       Date:  2007-01-31       Impact factor: 11.205

Review 4.  SBMLmerge, a system for combining biochemical network models.

Authors:  Marvin Schulz; Jannis Uhlendorf; Edda Klipp; Wolfram Liebermeister
Journal:  Genome Inform       Date:  2006

Review 5.  The growing scope of applications of genome-scale metabolic reconstructions using Escherichia coli.

Authors:  Adam M Feist; Bernhard Ø Palsson
Journal:  Nat Biotechnol       Date:  2008-06       Impact factor: 54.908

6.  Flux balance analysis accounting for metabolite dilution.

Authors:  Tomer Benyamini; Ori Folger; Eytan Ruppin; Tomer Shlomi
Journal:  Genome Biol       Date:  2010-04-16       Impact factor: 13.583

7.  The genetic landscape of a cell.

Authors:  Michael Costanzo; Anastasia Baryshnikova; Jeremy Bellay; Yungil Kim; Eric D Spear; Carolyn S Sevier; Huiming Ding; Judice L Y Koh; Kiana Toufighi; Sara Mostafavi; Jeany Prinz; Robert P St Onge; Benjamin VanderSluis; Taras Makhnevych; Franco J Vizeacoumar; Solmaz Alizadeh; Sondra Bahr; Renee L Brost; Yiqun Chen; Murat Cokol; Raamesh Deshpande; Zhijian Li; Zhen-Yuan Lin; Wendy Liang; Michaela Marback; Jadine Paw; Bryan-Joseph San Luis; Ermira Shuteriqi; Amy Hin Yan Tong; Nydia van Dyk; Iain M Wallace; Joseph A Whitney; Matthew T Weirauch; Guoqing Zhong; Hongwei Zhu; Walid A Houry; Michael Brudno; Sasan Ragibizadeh; Balázs Papp; Csaba Pál; Frederick P Roth; Guri Giaever; Corey Nislow; Olga G Troyanskaya; Howard Bussey; Gary D Bader; Anne-Claude Gingras; Quaid D Morris; Philip M Kim; Chris A Kaiser; Chad L Myers; Brenda J Andrews; Charles Boone
Journal:  Science       Date:  2010-01-22       Impact factor: 47.728

8.  Genome-scale gene/reaction essentiality and synthetic lethality analysis.

Authors:  Patrick F Suthers; Alireza Zomorrodi; Costas D Maranas
Journal:  Mol Syst Biol       Date:  2009-08-18       Impact factor: 11.429

9.  Optimization based automated curation of metabolic reconstructions.

Authors:  Vinay Satish Kumar; Madhukar S Dasika; Costas D Maranas
Journal:  BMC Bioinformatics       Date:  2007-06-20       Impact factor: 3.169

10.  Computational identification of obligatorily autocatalytic replicators embedded in metabolic networks.

Authors:  Adám Kun; Balázs Papp; Eörs Szathmáry
Journal:  Genome Biol       Date:  2008-03-10       Impact factor: 13.583
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