Literature DB >> 20411959

Coarse-grained molecular dynamics simulations of DNA condensation by block copolymer and formation of core-corona structures.

Jesse Ziebarth1, Yongmei Wang.   

Abstract

Coarse-grained molecular dynamics simulations are used to study the condensation of single polyanion chains with block n>an class="Chemical">copolymers composed of cationic and neutral blocks. The simulations are an effort to model complexes formed with DNA and cationic copolymers such as polyethylenimine-g-polyethylene glycol which have been used in gene delivery. The simulations reveal that increases in the cationic block length of the copolymer result in greater condensation of the polyanion. The ability of the complexes to form core-corona structures, with the neutral blocks of the copolymers forming a corona around a dense core formed from the charged beads, is investigated. The core-corona structure is shown to be dependent on both condensation of the polyanion chain and the length of the neutral block of the copolymer. Increasing the length of the cationic and neutral blocks of the copolymer both result in improvement in the core-corona structure. The internal structure of the complex core is shown to be a function of the architecture of the copolymer. Complexes formed from linear diblock copolymers have homogeneous cores with similarly arranged cationic and anionic beads; however, complexes formed with star-shaped copolymers have a layered core structure, with anionic beads found in the center of the cores.

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Year:  2010        PMID: 20411959      PMCID: PMC2877492          DOI: 10.1021/jp908327q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  13 in total

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5.  Coil-globule coexistence and compaction of DNA chains.

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Journal:  J Biol Phys       Date:  2006-12-15       Impact factor: 1.365

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Review 7.  Recent advances in rational gene transfer vector design based on poly(ethylene imine) and its derivatives.

Authors:  Michael Neu; Dagmar Fischer; Thomas Kissel
Journal:  J Gene Med       Date:  2005-08       Impact factor: 4.565

8.  Stoichiometric polyelectrolyte complexes of ionic block copolymers and oppositely charged polyions.

Authors:  E Yu Kramarenko; A R Khokhlov; P Reineker
Journal:  J Chem Phys       Date:  2006-11-21       Impact factor: 3.488

9.  Polyethylenimine-graft-poly(ethylene glycol) copolymers: influence of copolymer block structure on DNA complexation and biological activities as gene delivery system.

Authors:  Holger Petersen; Petra M Fechner; Alison L Martin; Klaus Kunath; Snjezana Stolnik; Clive J Roberts; Dagmar Fischer; Martyn C Davies; Thomas Kissel
Journal:  Bioconjug Chem       Date:  2002 Jul-Aug       Impact factor: 4.774

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Authors:  Ilja K Voets; Arie de Keizer; Martien A Cohen Stuart
Journal:  Adv Colloid Interface Sci       Date:  2008-10-17       Impact factor: 12.984

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  7 in total

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Journal:  J Control Release       Date:  2011-11-30       Impact factor: 9.776

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5.  Structural behavior of amphiphilic polyion complexes interacting with saturated lipid membranes investigated by coarse-grained molecular dynamic simulations.

Authors:  Daniel G Angelescu
Journal:  RSC Adv       Date:  2020-10-26       Impact factor: 4.036

6.  Langevin Dynamics Simulations of the Exchange of Complex Coacervate Core Micelles: The Role of Nonelectrostatic Attraction and Polyelectrolyte Length.

Authors:  Inge Bos; Joris Sprakel
Journal:  Macromolecules       Date:  2019-11-13       Impact factor: 5.985

7.  Glucose-containing diblock polycations exhibit molecular weight, charge, and cell-type dependence for pDNA delivery.

Authors:  Yaoying Wu; Miao Wang; Dustin Sprouse; Adam E Smith; Theresa M Reineke
Journal:  Biomacromolecules       Date:  2014-04-25       Impact factor: 6.988

  7 in total

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