Literature DB >> 20404492

Enhanced purity, activity and structural integrity of yeast ribosomes purified using a general chromatographic method.

Jonathan A Leshin1, Rasa Rakauskaitė, Jonathan D Dinman, Arturas Meskauskas.   

Abstract

One of the major challenges facing researchers working with eukaryotic ribosomes lies in their lability relative to their eubacterial and archael counterparts. In particular, lysis of cells and purification of eukaryotic ribosomes by conventional differential ultracentrifugation methods exposes them for long periods of time to a wide range of co-purifying proteases and nucleases, negatively impacting their structural integrity and functionality. A chromatographic method using a cysteine charged Sulfolink resin was adapted to address these problems. This fast and simple method significantly reduces co-purifying proteolytic and nucleolytic activities, producing good yields of highly biochemically active yeast ribosomes with fewer nicks in their rRNAs. In particular, the chromatographic purification protocol significantly improved the quality of ribosomes isolated from mutant cells. This method is likely applicable to mammalian ribosomes as well. The simplicity of the method, and the enhanced purity and activity of chromatographically purified ribosome represents a significant technical advancement for the study of eukaryotic ribosomes.

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Year:  2010        PMID: 20404492      PMCID: PMC4118464          DOI: 10.4161/rna.7.3.11648

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  19 in total

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Authors:  Kevin G McGarry; Sarah E Walker; Huanyu Wang; Kurt Fredrick
Journal:  Mol Cell       Date:  2005-11-23       Impact factor: 17.970

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Authors:  Frederick J LaRiviere; Sarah E Cole; Daniel J Ferullo; Melissa J Moore
Journal:  Mol Cell       Date:  2006-11-17       Impact factor: 17.970

5.  An arc of unpaired "hinge bases" facilitates information exchange among functional centers of the ribosome.

Authors:  Rasa Rakauskaite; Jonathan D Dinman
Journal:  Mol Cell Biol       Date:  2006-09-25       Impact factor: 4.272

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Authors:  Arturas Meskauskas; Alexey N Petrov; Jonathan D Dinman
Journal:  Mol Cell Biol       Date:  2005-12       Impact factor: 4.272

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Journal:  Proc Natl Acad Sci U S A       Date:  1981-09       Impact factor: 11.205

9.  Mutational analysis of the structure and localization of the nucleolus in the yeast Saccharomyces cerevisiae.

Authors:  M Oakes; J P Aris; J S Brockenbrough; H Wai; L Vu; M Nomura
Journal:  J Cell Biol       Date:  1998-10-05       Impact factor: 10.539

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Authors:  G E PALADE; P SIEKEVITZ
Journal:  J Biophys Biochem Cytol       Date:  1956-03-25
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  11 in total

1.  Chromatographic purification of highly active yeast ribosomes.

Authors:  Arturas Meskauskas; Jonathan A Leshin; Jonathan D Dinman
Journal:  J Vis Exp       Date:  2011-10-24       Impact factor: 1.355

2.  High throughput structural analysis of yeast ribosomes using hSHAPE.

Authors:  Jonathan A Leshin; Ryan Heselpoth; Ashton Trey Belew; Jonathan Dinman
Journal:  RNA Biol       Date:  2011-05-01       Impact factor: 4.652

3.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

4.  Proofreading of pre-40S ribosome maturation by a translation initiation factor and 60S subunits.

Authors:  Simon Lebaron; Claudia Schneider; Robert W van Nues; Agata Swiatkowska; Dietrich Walsh; Bettina Böttcher; Sander Granneman; Nicholas J Watkins; David Tollervey
Journal:  Nat Struct Mol Biol       Date:  2012-07-01       Impact factor: 15.369

5.  A molecular clamp ensures allosteric coordination of peptidyltransfer and ligand binding to the ribosomal A-site.

Authors:  Arturas Meskauskas; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2010-07-21       Impact factor: 16.971

6.  A flexible loop in yeast ribosomal protein L11 coordinates P-site tRNA binding.

Authors:  Michael H J Rhodin; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2010-08-12       Impact factor: 16.971

7.  Active yeast ribosome preparation using monolithic anion exchange chromatography.

Authors:  Antonio M Munoz; Paul Yourik; Vaishnavi Rajagopal; Jagpreet S Nanda; Jon R Lorsch; Sarah E Walker
Journal:  RNA Biol       Date:  2016-12-16       Impact factor: 4.652

8.  Use of Baby Spinach and Broccoli for imaging of structured cellular RNAs.

Authors:  Maho Okuda; Dominique Fourmy; Satoko Yoshizawa
Journal:  Nucleic Acids Res       Date:  2017-02-17       Impact factor: 16.971

9.  Eukaryotic rpL10 drives ribosomal rotation.

Authors:  Sergey O Sulima; Suna P Gülay; Margarida Anjos; Stephanie Patchett; Arturas Meskauskas; Arlen W Johnson; Jonathan D Dinman
Journal:  Nucleic Acids Res       Date:  2013-11-08       Impact factor: 16.971

10.  Structure of the ribosome post-recycling complex probed by chemical cross-linking and mass spectrometry.

Authors:  Kristin Kiosze-Becker; Alessandro Ori; Milan Gerovac; André Heuer; Elina Nürenberg-Goloub; Umar Jan Rashid; Thomas Becker; Roland Beckmann; Martin Beck; Robert Tampé
Journal:  Nat Commun       Date:  2016-11-08       Impact factor: 14.919

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