Literature DB >> 20403450

Expression of microRNAs and its regulation in plants.

Zhixin Xie1, Kanhav Khanna, Songlin Ruan.   

Abstract

MicroRNAs (miRNAs) have emerged as an essential regulatory component in plants. Many of the known miRNAs are evolutionarily conserved across diverse plant species and function in the regulatory control of fundamentally important biological processes such as developmental timing, patterning, and response to environmental changes. Expression of miRNAs in plants involves transcription from MIRNA loci by RNA polymerase II (pol II), multi-step processing of the primary transcripts by the DICER-LIKE1 (DCL1) complex, and formation of effector complexes consisting of mature miRNAs and ARGONAUTE (AGO) family proteins. In this short review, we present the most recent advances in our understanding of the molecular machinery as well as the regulatory mechanisms involved in the expression of miRNAs in plants.
Copyright © 2010 Elsevier Ltd. All rights reserved.

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Year:  2010        PMID: 20403450      PMCID: PMC2939293          DOI: 10.1016/j.semcdb.2010.03.012

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  73 in total

1.  SERRATE: a new player on the plant microRNA scene.

Authors:  Dajana Lobbes; Ghanasyam Rallapalli; Dominik D Schmidt; Cathie Martin; Jonathan Clarke
Journal:  EMBO Rep       Date:  2006-09-15       Impact factor: 8.807

2.  Identification of microRNA processing determinants by random mutagenesis of Arabidopsis MIR172a precursor.

Authors:  Julieta L Mateos; Nicolás G Bologna; Uciel Chorostecki; Javier F Palatnik
Journal:  Curr Biol       Date:  2009-12-10       Impact factor: 10.834

3.  Structure determinants for accurate processing of miR172a in Arabidopsis thaliana.

Authors:  Schallum Werner; Heike Wollmann; Korbinian Schneeberger; Detlef Weigel
Journal:  Curr Biol       Date:  2010-01-12       Impact factor: 10.834

4.  Identification of MIR390a precursor processing-defective mutants in Arabidopsis by direct genome sequencing.

Authors:  Josh T Cuperus; Taiowa A Montgomery; Noah Fahlgren; Russell T Burke; Tiffany Townsend; Christopher M Sullivan; James C Carrington
Journal:  Proc Natl Acad Sci U S A       Date:  2009-12-14       Impact factor: 11.205

5.  RNA secondary structural determinants of miRNA precursor processing in Arabidopsis.

Authors:  Liang Song; Michael J Axtell; Nina V Fedoroff
Journal:  Curr Biol       Date:  2010-01-12       Impact factor: 10.834

6.  The role of floral organs in carpels, an Arabidopsis loss-of-function mutation in MicroRNA160a, in organogenesis and the mechanism regulating its expression.

Authors:  Xiaodong Liu; Jian Huang; Yao Wang; Kanhav Khanna; Zhixin Xie; Heather A Owen; Dazhong Zhao
Journal:  Plant J       Date:  2010-02-03       Impact factor: 6.417

7.  Rice MicroRNA effector complexes and targets.

Authors:  Liang Wu; Qingqing Zhang; Huanyu Zhou; Fangrui Ni; Xueying Wu; Yijun Qi
Journal:  Plant Cell       Date:  2009-11-10       Impact factor: 11.277

8.  The Arabidopsis thaliana double-stranded RNA binding protein DRB1 directs guide strand selection from microRNA duplexes.

Authors:  Andrew L Eamens; Neil A Smith; Shaun J Curtin; Ming-Bo Wang; Peter M Waterhouse
Journal:  RNA       Date:  2009-10-27       Impact factor: 4.942

9.  A loop-to-base processing mechanism underlies the biogenesis of plant microRNAs miR319 and miR159.

Authors:  Nicolás G Bologna; Julieta L Mateos; Edgardo G Bresso; Javier F Palatnik
Journal:  EMBO J       Date:  2009-10-08       Impact factor: 11.598

10.  Plant polycistronic precursors containing non-homologous microRNAs target transcripts encoding functionally related proteins.

Authors:  Francisco Merchan; Adnane Boualem; Martin Crespi; Florian Frugier
Journal:  Genome Biol       Date:  2009-12-01       Impact factor: 13.583

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  36 in total

Review 1.  Regulation of small RNA stability: methylation and beyond.

Authors:  Lijuan Ji; Xuemei Chen
Journal:  Cell Res       Date:  2012-03-13       Impact factor: 25.617

Review 2.  Small Genetic Circuits and MicroRNAs: Big Players in Polymerase II Transcriptional Control in Plants.

Authors:  Molly Megraw; Jason S Cumbie; Maria G Ivanchenko; Sergei A Filichkin
Journal:  Plant Cell       Date:  2016-02-11       Impact factor: 11.277

3.  Deep sequencing discovery of novel and conserved microRNAs in wild type and a white-flesh mutant strawberry.

Authors:  He Li; Wenjuan Mao; Wei Liu; Hongyan Dai; Yuexue Liu; Yue Ma; Zhihong Zhang
Journal:  Planta       Date:  2013-06-27       Impact factor: 4.116

4.  sRNA-FISH: versatile fluorescent in situ detection of small RNAs in plants.

Authors:  Kun Huang; Patricia Baldrich; Blake C Meyers; Jeffrey L Caplan
Journal:  Plant J       Date:  2019-02-12       Impact factor: 6.417

5.  ASR5 is involved in the regulation of miRNA expression in rice.

Authors:  Lauro Bücker Neto; Rafael Augusto Arenhart; Luiz Felipe Valter de Oliveira; Júlio Cesar de Lima; Maria Helena Bodanese-Zanettini; Rogerio Margis; Márcia Margis-Pinheiro
Journal:  Plant Cell Rep       Date:  2015-07-17       Impact factor: 4.570

Review 6.  Host-Pathogen interactions modulated by small RNAs.

Authors:  Waqar Islam; Saif Ul Islam; Muhammad Qasim; Liande Wang
Journal:  RNA Biol       Date:  2017-04-21       Impact factor: 4.652

7.  Hyponastic Leaves 1 protects pri-miRNAs from nuclear exosome attack.

Authors:  Shuai Gao; Jingyu Wang; Ning Jiang; Shiting Zhang; Yuan Wang; Jun Zhang; Ning Li; Yixiao Fang; Lin Yang; Susu Chen; Bingbing Yan; Tian Huang; Benke Kuai; Yingxiang Wang; Fang Chang; Guodong Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-07       Impact factor: 11.205

8.  An importin β protein negatively regulates MicroRNA activity in Arabidopsis.

Authors:  Wei Wang; Ruiqiang Ye; Ying Xin; Xiaofeng Fang; Chunlian Li; Huiqing Shi; Xueping Zhou; Yijun Qi
Journal:  Plant Cell       Date:  2011-10-07       Impact factor: 11.277

9.  Identification of drought-responsive miRNAs in Hippophae tibetana using high-throughput sequencing.

Authors:  Gang Fan; Yue Liu; Huan Du; Tingting Kuang; Yi Zhang
Journal:  3 Biotech       Date:  2020-01-21       Impact factor: 2.406

10.  NOT2 proteins promote polymerase II-dependent transcription and interact with multiple MicroRNA biogenesis factors in Arabidopsis.

Authors:  Lulu Wang; Xianwei Song; Lianfeng Gu; Xin Li; Shouyun Cao; Chengcai Chu; Xia Cui; Xuemei Chen; Xiaofeng Cao
Journal:  Plant Cell       Date:  2013-02-19       Impact factor: 11.277

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