Literature DB >> 2040290

Anion binding at the active site of trypanosomal triosephosphate isomerase. Monohydrogen phosphate does not mimic sulphate.

C L Verlinde1, M E Noble, K H Kalk, H Groendijk, R K Wierenga, W G Hol.   

Abstract

The three-dimensional structure of triosephosphate isomerase complexed with the competitive inhibitor SO-4(2) was determined by X-ray crystallography to a resolution of 0.24 nm. A comparison with the native crystal structure, where SO-4(2) is bound, revealed five changes: (a) a 0.10-nm shift of the anion-binding site; (b) a further closing of the flexible loop of the enzyme; (c) a 'swinging in' of the side chain of the catalytic Glu, that is chi 1 changes from (+) to (-) synclinal; (d) an altered water structure; (e) a disappearance of the conformational heterogeneity at the C-terminus of strand beta 7. Some of these changes may be related to the different hydrogen-bond pattern about the two different anions. However, the distance of 0.10 nm between the sulphur and phosphorus positions is unexpected and remains intriguing.

Entities:  

Mesh:

Substances:

Year:  1991        PMID: 2040290     DOI: 10.1111/j.1432-1033.1991.tb15985.x

Source DB:  PubMed          Journal:  Eur J Biochem        ISSN: 0014-2956


  10 in total

1.  In search of new lead compounds for trypanosomiasis drug design: a protein structure-based linked-fragment approach.

Authors:  C L Verlinde; G Rudenko; W G Hol
Journal:  J Comput Aided Mol Des       Date:  1992-04       Impact factor: 3.686

2.  Dimeric quaternary structure of the prototypical dual specificity phosphatase VH1.

Authors:  Adem C Koksal; Jonathan D Nardozzi; Gino Cingolani
Journal:  J Biol Chem       Date:  2009-02-10       Impact factor: 5.157

Review 3.  Prediction of binding constants of protein ligands: a fast method for the prioritization of hits obtained from de novo design or 3D database search programs.

Authors:  H J Böhm
Journal:  J Comput Aided Mol Des       Date:  1998-07       Impact factor: 3.686

4.  Wildtype and engineered monomeric triosephosphate isomerase from Trypanosoma brucei: partitioning of reaction intermediates in D2O and activation by phosphite dianion.

Authors:  M Merced Malabanan; Maybelle K Go; Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2011-06-06       Impact factor: 3.162

5.  A TROSY CPMG sequence for characterizing chemical exchange in large proteins.

Authors:  J P Loria; M Rance; A G Palmer
Journal:  J Biomol NMR       Date:  1999-10       Impact factor: 2.835

6.  Active-Site Glu165 Activation in Triosephosphate Isomerase and Its Deprotonation Kinetics.

Authors:  Hua Deng; R Brian Dyer; Robert Callender
Journal:  J Phys Chem B       Date:  2019-05-02       Impact factor: 2.991

7.  Structure of the complex between trypanosomal triosephosphate isomerase and N-hydroxy-4-phosphono-butanamide: binding at the active site despite an "open" flexible loop conformation.

Authors:  C L Verlinde; C J Witmans; T Pijning; K H Kalk; W G Hol; M Callens; F R Opperdoes
Journal:  Protein Sci       Date:  1992-12       Impact factor: 6.725

8.  Enzymatic catalysis of proton transfer at carbon: activation of triosephosphate isomerase by phosphite dianion.

Authors:  Tina L Amyes; John P Richard
Journal:  Biochemistry       Date:  2007-04-20       Impact factor: 3.162

Review 9.  The Potential of Secondary Metabolites from Plants as Drugs or Leads against Protozoan Neglected Diseases-Part III: In-Silico Molecular Docking Investigations.

Authors:  Ifedayo Victor Ogungbe; William N Setzer
Journal:  Molecules       Date:  2016-10-19       Impact factor: 4.411

Review 10.  Protein crystallography and infectious diseases.

Authors:  C L Verlinde; E A Merritt; F Van den Akker; H Kim; I Feil; L F Delboni; S C Mande; S Sarfaty; P H Petra; W G Hol
Journal:  Protein Sci       Date:  1994-10       Impact factor: 6.725

  10 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.