Literature DB >> 20393973

The publication and database deposition of molecular interaction data.

Sandra Orchard1, Bruno Aranda, Henning Hermjakob.   

Abstract

Depositing data to a public domain interaction database not only improves the quality and quantity of interactions available to the user community, but also increases the visibility of the data, with members of the International Molecular Exchange (IMEx) databases making the information available in all participating resources. Datasets submitted prior to publication will be issued an accession number that may be included in a publication and which increases user accessibility to the data. No dataset is too small for submission, and the database curators will provide assistance in ensuring the information is correctly represented. This unit provides several alternative protocols to assist the author in preparing and submitting data as an integral part of the manuscript-preparation process. Which method the author selects is largely dictated by the amount of data to be deposited. In addition, two support protocols describe assignment of unambiguous accession numbers and use of controlled vocabulary terms.

Mesh:

Year:  2010        PMID: 20393973     DOI: 10.1002/0471140864.ps2503s60

Source DB:  PubMed          Journal:  Curr Protoc Protein Sci        ISSN: 1934-3655


  4 in total

1.  Using ProHits to store, annotate, and analyze affinity purification-mass spectrometry (AP-MS) data.

Authors:  Guomin Liu; Jianping Zhang; Hyungwon Choi; Jean-Philippe Lambert; Tharan Srikumar; Brett Larsen; Alexey I Nesvizhskii; Brian Raught; Mike Tyers; Anne-Claude Gingras
Journal:  Curr Protoc Bioinformatics       Date:  2012-09

2.  Towards establishment of a rice stress response interactome.

Authors:  Young-Su Seo; Mawsheng Chern; Laura E Bartley; Muho Han; Ki-Hong Jung; Insuk Lee; Harkamal Walia; Todd Richter; Xia Xu; Peijian Cao; Wei Bai; Rajeshwari Ramanan; Fawn Amonpant; Loganathan Arul; Patrick E Canlas; Randy Ruan; Chang-Jin Park; Xuewei Chen; Sohyun Hwang; Jong-Seong Jeon; Pamela C Ronald
Journal:  PLoS Genet       Date:  2011-04-14       Impact factor: 5.917

3.  The BioGRID Interaction Database: 2011 update.

Authors:  Chris Stark; Bobby-Joe Breitkreutz; Andrew Chatr-Aryamontri; Lorrie Boucher; Rose Oughtred; Michael S Livstone; Julie Nixon; Kimberly Van Auken; Xiaodong Wang; Xiaoqi Shi; Teresa Reguly; Jennifer M Rust; Andrew Winter; Kara Dolinski; Mike Tyers
Journal:  Nucleic Acids Res       Date:  2010-11-11       Impact factor: 16.971

4.  neXtProt: a knowledge platform for human proteins.

Authors:  Lydie Lane; Ghislaine Argoud-Puy; Aurore Britan; Isabelle Cusin; Paula D Duek; Olivier Evalet; Alain Gateau; Pascale Gaudet; Anne Gleizes; Alexandre Masselot; Catherine Zwahlen; Amos Bairoch
Journal:  Nucleic Acids Res       Date:  2011-12-01       Impact factor: 16.971

  4 in total

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