Literature DB >> 20387155

Small RNA cloning.

Seungil Ro1, Wei Yan.   

Abstract

The next generation sequencing technologies have made the exhaustive sequencing of all small RNA species within a small RNA library possible. Thus, comparative studies on the changes in small-RNA transcriptomes between two biological samples represent a powerful means of revealing the functions of small RNAs in physiological and pathological processes. Here, we describe a small RNA cloning method that can be used to generate small RNA cDNA libraries for both conventional and next generation (deep) sequencing. It can also be used for detection and quantitative analyses of small RNAs using PCR.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20387155      PMCID: PMC3052395          DOI: 10.1007/978-1-60761-657-3_17

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  22 in total

Review 1.  Small nucleolar RNAs: versatile trans-acting molecules of ancient evolutionary origin.

Authors:  Michael P Terns; Rebecca M Terns
Journal:  Gene Expr       Date:  2002

2.  The small RNA profile during Drosophila melanogaster development.

Authors:  Alexei A Aravin; Mariana Lagos-Quintana; Abdullah Yalcin; Mihaela Zavolan; Debora Marks; Ben Snyder; Terry Gaasterland; Jutta Meyer; Thomas Tuschl
Journal:  Dev Cell       Date:  2003-08       Impact factor: 12.270

Review 3.  Small RNAs just got bigger: Piwi-interacting RNAs (piRNAs) in mammalian testes.

Authors:  V Narry Kim
Journal:  Genes Dev       Date:  2006-08-01       Impact factor: 11.361

4.  Cloning and expression profiling of small RNAs expressed in the mouse ovary.

Authors:  Seungil Ro; Rui Song; Chanjae Park; Huili Zheng; Kenton M Sanders; Wei Yan
Journal:  RNA       Date:  2007-10-19       Impact factor: 4.942

5.  Cloning and expression profiling of testis-expressed microRNAs.

Authors:  Seungil Ro; Chanjae Park; Kenton M Sanders; John R McCarrey; Wei Yan
Journal:  Dev Biol       Date:  2007-09-18       Impact factor: 3.582

6.  Cloning and expression profiling of testis-expressed piRNA-like RNAs.

Authors:  Seungil Ro; Chanjae Park; Rui Song; Dan Nguyen; Jingling Jin; Kenton M Sanders; John R McCarrey; Wei Yan
Journal:  RNA       Date:  2007-08-13       Impact factor: 4.942

7.  Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans.

Authors:  J Graham Ruby; Calvin Jan; Christopher Player; Michael J Axtell; William Lee; Chad Nusbaum; Hui Ge; David P Bartel
Journal:  Cell       Date:  2006-12-15       Impact factor: 41.582

8.  An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans.

Authors:  N C Lau; L P Lim; E G Weinstein; D P Bartel
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

9.  An extensive class of small RNAs in Caenorhabditis elegans.

Authors:  R C Lee; V Ambros
Journal:  Science       Date:  2001-10-26       Impact factor: 47.728

10.  MicroRNAs in gene regulation: when the smallest governs it all.

Authors:  Dominique L Ouellet; Marjorie P Perron; Lise-Andrée Gobeil; Pierre Plante; Patrick Provost
Journal:  J Biomed Biotechnol       Date:  2006
View more
  4 in total

1.  Small RNA library construction from minute biological samples.

Authors:  Jessica A Matts; Yuliya Sytnikova; Gung-Wei Chirn; Gabor L Igloi; Nelson C Lau
Journal:  Methods Mol Biol       Date:  2014

2.  Serum response factor-dependent MicroRNAs regulate gastrointestinal smooth muscle cell phenotypes.

Authors:  Chanjae Park; Grant W Hennig; Kenton M Sanders; Jonathan H Cho; William J Hatton; Doug Redelman; Jong Kun Park; Sean M Ward; Joseph M Miano; Wei Yan; Seungil Ro
Journal:  Gastroenterology       Date:  2011-04-05       Impact factor: 22.682

3.  Circulating microRNAs in Hidradenitis Suppurativa.

Authors:  Bruna De Felice; Concetta Montanino; Marta Mallardo; Graziella Babino; Edi Mattera; Giovanni Ragozzino; Giuseppe Argenziano; Aurora Daniele; Ersilia Nigro
Journal:  Genes (Basel)       Date:  2022-08-26       Impact factor: 4.141

4.  MicroRNA Expression Signature in Mild Cognitive Impairment Due to Alzheimer's Disease.

Authors:  Bruna De Felice; Concetta Montanino; Mariano Oliva; Simona Bonavita; Valeria Di Onofrio; Cinzia Coppola
Journal:  Mol Neurobiol       Date:  2020-07-31       Impact factor: 5.590

  4 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.