Literature DB >> 20383015

Crystallization and initial X-ray diffraction studies of the flavoenzyme NAD(P)H:(acceptor) oxidoreductase (FerB) from the soil bacterium Paracoccus denitrificans.

Tomás Klumpler1, Vojtech Sedlácek, Jaromír Marek, Michaela Wimmerová, Igor Kucera.   

Abstract

The flavin-dependent enzyme FerB from Paracoccus denitrificans reduces a broad range of compounds, including ferric complexes, chromate and most notably quinones, at the expense of the reduced nicotinamide adenine dinucleotide cofactors NADH or NADPH. Recombinant unmodified and SeMet-substituted FerB were crystallized under similar conditions by the hanging-drop vapour-diffusion method with microseeding using PEG 4000 as the precipitant. FerB crystallized in several different crystal forms, some of which diffracted to approximately 1.8 A resolution. The crystals of native FerB belonged to space group P2(1), with unit-cell parameters a = 61.6, b = 110.1, c = 65.2 A, beta = 118.2 degrees and four protein molecules in the asymmetric unit, whilst the SeMet-substituted form crystallized in space group P2(1)2(1)2, with unit-cell parameters a = 61.2, b = 89.2, c = 71.5 A and two protein molecules in the asymmetric unit. Structure determination by the three-wavelength MAD/MRSAD method is now in progress.

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Year:  2010        PMID: 20383015      PMCID: PMC2852337          DOI: 10.1107/S1744309110005099

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  21 in total

1.  Purification to homogeneity and characterization of a novel Pseudomonas putida chromate reductase.

Authors:  C H Park; M Keyhan; B Wielinga; S Fendorf; A Matin
Journal:  Appl Environ Microbiol       Date:  2000-05       Impact factor: 4.792

2.  Structure determination of an FMN reductase from Pseudomonas aeruginosa PA01 using sulfur anomalous signal.

Authors:  Rakhi Agarwal; Jeffrey B Bonanno; Stephen K Burley; Subramanyam Swaminathan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-03-18

3.  Heterologous expression and molecular characterization of the NAD(P)H:acceptor oxidoreductase (FerB) of Paracoccus denitrificans.

Authors:  Radek Tesarík; Vojtech Sedlácek; Jana Plocková; Michaela Wimmerová; Jaroslav Turánek; Igor Kucera
Journal:  Protein Expr Purif       Date:  2009-08-03       Impact factor: 1.650

4.  Improved tools for biological sequence comparison.

Authors:  W R Pearson; D J Lipman
Journal:  Proc Natl Acad Sci U S A       Date:  1988-04       Impact factor: 11.205

5.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

6.  ChrR, a soluble quinone reductase of Pseudomonas putida that defends against H2O2.

Authors:  Claudio F Gonzalez; David F Ackerley; Susan V Lynch; A Matin
Journal:  J Biol Chem       Date:  2005-04-19       Impact factor: 5.157

7.  Isolation and biochemical characterization of two soluble iron(III) reductases from Paracoccus denitrificans.

Authors:  Jirí Mazoch; Radek Tesarík; Vojtech Sedlácek; Igor Kucera; Jaroslav Turánek
Journal:  Eur J Biochem       Date:  2004-02

8.  Characterization of the quinone reductase activity of the ferric reductase B protein from Paracoccus denitrificans.

Authors:  Vojtech Sedlácek; Rob J M van Spanning; Igor Kucera
Journal:  Arch Biochem Biophys       Date:  2008-12-30       Impact factor: 4.013

9.  Atomic structures of the human immunophilin FKBP-12 complexes with FK506 and rapamycin.

Authors:  G D Van Duyne; R F Standaert; P A Karplus; S L Schreiber; J Clardy
Journal:  J Mol Biol       Date:  1993-01-05       Impact factor: 5.469

10.  Ferric reductase A is essential for effective iron acquisition in Paracoccus denitrificans.

Authors:  Vojtěch Sedláček; Rob J M van Spanning; Igor Kučera
Journal:  Microbiology       Date:  2009-04       Impact factor: 2.777

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  1 in total

1.  The structural and functional basis of catalysis mediated by NAD(P)H:acceptor Oxidoreductase (FerB) of Paracoccus denitrificans.

Authors:  Vojtěch Sedláček; Tomáš Klumpler; Jaromír Marek; Igor Kučera
Journal:  PLoS One       Date:  2014-05-09       Impact factor: 3.240

  1 in total

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