Literature DB >> 20382761

Complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, a representative of the SAR116 clade in the Alphaproteobacteria.

Hyun-Myung Oh1, Kae Kyoung Kwon, Ilnam Kang, Sung Gyun Kang, Jung-Hyun Lee, Sang-Jin Kim, Jang-Cheon Cho.   

Abstract

The complete genome sequence of "Candidatus Puniceispirillum marinum" IMCC1322, the first cultured representative of the SAR116 clade in the Alphaproteobacteria, is reported here. The genome contains genes for proteorhodopsin, aerobic-type carbon monoxide dehydrogenase, dimethylsulfoniopropionate demethylase, and C(1) compound metabolism. The genome information proposes the SAR116 group to be metabolic generalists in ocean nutrient cycling.

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Year:  2010        PMID： 20382761      PMCID： PMC2901696          DOI： 10.1128/JB.00347-10

Source DB:  PubMed          Journal:  J Bacteriol        ISSN： 0021-9193            Impact factor:   3.490


  8 in total

1.  Proteorhodopsin phototrophy in the ocean.

Authors:  O Béjà; E N Spudich; J L Spudich; M Leclerc; E F DeLong
Journal:  Nature       Date:  2001-06-14       Impact factor: 49.962

2.  Light-powering Escherichia coli with proteorhodopsin.

Authors:  Jessica M Walter; Derek Greenfield; Carlos Bustamante; Jan Liphardt
Journal:  Proc Natl Acad Sci U S A       Date:  2007-02-02       Impact factor: 11.205

Review 3.  Distribution, diversity and ecology of aerobic CO-oxidizing bacteria.

Authors:  Gary M King; Carolyn F Weber
Journal:  Nat Rev Microbiol       Date:  2007-02       Impact factor: 60.633

4.  Bacterial taxa that limit sulfur flux from the ocean.

Authors:  Erinn C Howard; James R Henriksen; Alison Buchan; Chris R Reisch; Helmut Bürgmann; Rory Welsh; Wenying Ye; José M González; Kimberly Mace; Samantha B Joye; Ronald P Kiene; William B Whitman; Mary Ann Moran
Journal:  Science       Date:  2006-10-27       Impact factor: 47.728

5.  Phylogenetic analysis of a natural marine bacterioplankton population by rRNA gene cloning and sequencing.

Authors:  T B Britschgi; S J Giovannoni
Journal:  Appl Environ Microbiol       Date:  1991-06       Impact factor: 4.792

6.  Genome streamlining in a cosmopolitan oceanic bacterium.

Authors:  Stephen J Giovannoni; H James Tripp; Scott Givan; Mircea Podar; Kevin L Vergin; Damon Baptista; Lisa Bibbs; Jonathan Eads; Toby H Richardson; Michiel Noordewier; Michael S Rappé; Jay M Short; James C Carrington; Eric J Mathur
Journal:  Science       Date:  2005-08-19       Impact factor: 47.728

7.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

8.  Phage_Finder: automated identification and classification of prophage regions in complete bacterial genome sequences.

Authors:  Derrick E Fouts
Journal:  Nucleic Acids Res       Date:  2006-10-24       Impact factor: 16.971
  8 in total
  40 in total

1.  Expansion of Cultured Bacterial Diversity by Large-Scale Dilution-to-Extinction Culturing from a Single Seawater Sample.

Authors:  Seung-Jo Yang; Ilnam Kang; Jang-Cheon Cho
Journal:  Microb Ecol       Date:  2015-11-14       Impact factor: 4.552

2.  Genome Reconstruction from Metagenomic Data Sets Reveals Novel Microbes in the Brackish Waters of the Caspian Sea.

Authors:  Maliheh Mehrshad; Mohammad Ali Amoozegar; Rohit Ghai; Seyed Abolhassan Shahzadeh Fazeli; Francisco Rodriguez-Valera
Journal:  Appl Environ Microbiol       Date:  2016-01-04       Impact factor: 4.792

3.  Changes in dimethylsulfoniopropionate demethylase gene assemblages in response to an induced phytoplankton bloom.

Authors:  Erinn C Howard; Shulei Sun; Christopher R Reisch; Daniela A del Valle; Helmut Bürgmann; Ronald P Kiene; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2010-11-19       Impact factor: 4.792

4.  Genome of a SAR116 bacteriophage shows the prevalence of this phage type in the oceans.

Authors:  Ilnam Kang; Hyun-Myung Oh; Dongmin Kang; Jang-Cheon Cho
Journal:  Proc Natl Acad Sci U S A       Date:  2013-06-24       Impact factor: 11.205

5.  Microbial rhodopsins on leaf surfaces of terrestrial plants.

Authors:  Nof Atamna-Ismaeel; Omri M Finkel; Fabian Glaser; Itai Sharon; Ron Schneider; Anton F Post; John L Spudich; Christian von Mering; Julia A Vorholt; David Iluz; Oded Béjà; Shimshon Belkin
Journal:  Environ Microbiol       Date:  2011-09-01       Impact factor: 5.491

6.  On-Site Analysis of Bacterial Communities of the Ultraoligotrophic South Pacific Gyre.

Authors:  Greta Reintjes; Halina E Tegetmeyer; Miriam Bürgisser; Sandi Orlić; Ivo Tews; Mikhail Zubkov; Daniela Voß; Oliver Zielinski; Christian Quast; Frank Oliver Glöckner; Rudolf Amann; Timothy G Ferdelman; Bernhard M Fuchs
Journal:  Appl Environ Microbiol       Date:  2019-07-01       Impact factor: 4.792

7.  Metabolic evolution and the self-organization of ecosystems.

Authors:  Rogier Braakman; Michael J Follows; Sallie W Chisholm
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-27       Impact factor: 11.205

Review 8.  Marine Bacterial and Archaeal Ion-Pumping Rhodopsins: Genetic Diversity, Physiology, and Ecology.

Authors:  Jarone Pinhassi; Edward F DeLong; Oded Béjà; José M González; Carlos Pedrós-Alió
Journal:  Microbiol Mol Biol Rev       Date:  2016-09-14       Impact factor: 11.056

9.  Isolation, cultivation, and genome analysis of proteorhodopsin-containing SAR116-clade strain Candidatus Puniceispirillum marinum IMCC1322.

Authors:  Junhak Lee; Kae Kyoung Kwon; Seung-Il Lim; Jaeho Song; Ah Reum Choi; Sung-Hyun Yang; Kwang-Hwan Jung; Jung-Hyun Lee; Sung Gyun Kang; Hyun-Myung Oh; Jang-Cheon Cho
Journal:  J Microbiol       Date:  2019-06-14       Impact factor: 3.422

10.  Manganese uptake in marine bacteria; the novel MntX transporter is widespread in Roseobacters, Vibrios, Alteromonadales and the SAR11 and SAR116 clades.

Authors:  Robert T Green; Jonathan D Todd; Andrew W B Johnston
Journal:  ISME J       Date:  2012-11-29       Impact factor: 10.302
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