Literature DB >> 20373503

Normalizing cDNA libraries.

Ekaterina A Bogdanov1, Irina Shagina, Ekaterina V Barsova, Ilya Kelmanson, Dmitry A Shagin, Sergey A Lukyanov.   

Abstract

The characterization of rare messages in cDNA libraries is complicated by the substantial variations that exist in the abundance levels of different transcripts in cells and tissues. The equalization (normalization) of cDNA is a helpful approach for decreasing the prevalence of abundant transcripts, thereby facilitating the assessment of rare transcripts. This unit provides a method for duplex-specific nuclease (DSN)-based normalization, which allows for the fast and reliable equalization of cDNA, thereby facilitating the generation of normalized, full-length-enriched cDNA libraries, and enabling efficient RNA analyses. (c) 2010 by John Wiley & Sons, Inc.

Mesh:

Substances:

Year:  2010        PMID: 20373503     DOI: 10.1002/0471142727.mb0512s90

Source DB:  PubMed          Journal:  Curr Protoc Mol Biol        ISSN: 1934-3647


  6 in total

1.  Construction of normalized RNA-seq libraries for next-generation sequencing using the crab duplex-specific nuclease.

Authors:  Danos C Christodoulou; Joshua M Gorham; Daniel S Herman; J G Seidman
Journal:  Curr Protoc Mol Biol       Date:  2011-04

2.  cDNA Library Enrichment of Full Length Transcripts for SMRT Long Read Sequencing.

Authors:  Maria Cartolano; Bruno Huettel; Benjamin Hartwig; Richard Reinhardt; Korbinian Schneeberger
Journal:  PLoS One       Date:  2016-06-21       Impact factor: 3.240

3.  Gain-of-function in Arabidopsis (GAINA) for identifying functional genes in Hevea brasiliensis.

Authors:  Han Cheng; Jing Gao; Haibin Cai; Jianshun Zhu; Huasun Huang
Journal:  Springerplus       Date:  2016-10-22

4.  The Impact of cDNA Normalization on Long-Read Sequencing of a Complex Transcriptome.

Authors:  Nam V Hoang; Agnelo Furtado; Virginie Perlo; Frederik C Botha; Robert J Henry
Journal:  Front Genet       Date:  2019-07-23       Impact factor: 4.599

5.  Next-generation yeast-two-hybrid analysis with Y2H-SCORES identifies novel interactors of the MLA immune receptor.

Authors:  Valeria Velásquez-Zapata; J Mitch Elmore; Sagnik Banerjee; Karin S Dorman; Roger P Wise
Journal:  PLoS Comput Biol       Date:  2021-04-02       Impact factor: 4.475

6.  An improved canine genome and a comprehensive catalogue of coding genes and non-coding transcripts.

Authors:  Marc P Hoeppner; Andrew Lundquist; Mono Pirun; Jennifer R S Meadows; Neda Zamani; Jeremy Johnson; Görel Sundström; April Cook; Michael G FitzGerald; Ross Swofford; Evan Mauceli; Behrooz Torabi Moghadam; Anna Greka; Jessica Alföldi; Amr Abouelleil; Lynne Aftuck; Daniel Bessette; Aaron Berlin; Adam Brown; Gary Gearin; Annie Lui; J Pendexter Macdonald; Margaret Priest; Terrance Shea; Jason Turner-Maier; Andrew Zimmer; Eric S Lander; Federica di Palma; Kerstin Lindblad-Toh; Manfred G Grabherr
Journal:  PLoS One       Date:  2014-03-13       Impact factor: 3.240

  6 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.