Literature DB >> 20370693

Non-linear modeling and chemical interpretation with aid of support vector machine and regression.

Kiyoshi Hasegawa1, Kimito Funatsu.   

Abstract

In quantitative structure-activity relationship (QSAR) and quantitative structure-property relationship (QSPR), there is a considerable interest in support vector machine (SVM) and support vector regression (SVR) for data modeling. SVM and SVR have a high performance for classification and regression rates, but their chemical interpretations are not feasible. In this review, we present some promising approaches to visualize and interpret the SVM and SVR models. This type analysis would be useful for molecular design. Representative examples derived from chemoinformatics and bioinformatics are highlighted in detail. We also refer to a structure generator based on SVR score in the framework of de novo design. Furthermore, we provide readers the theoretical description of SVM and SVR.

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Year:  2010        PMID: 20370693     DOI: 10.2174/157340910790980124

Source DB:  PubMed          Journal:  Curr Comput Aided Drug Des        ISSN: 1573-4099            Impact factor:   1.606


  4 in total

1.  Quantum probability ranking principle for ligand-based virtual screening.

Authors:  Mohammed Mumtaz Al-Dabbagh; Naomie Salim; Mubarak Himmat; Ali Ahmed; Faisal Saeed
Journal:  J Comput Aided Mol Des       Date:  2017-02-20       Impact factor: 3.686

2.  Evolution of Support Vector Machine and Regression Modeling in Chemoinformatics and Drug Discovery.

Authors:  Raquel Rodríguez-Pérez; Jürgen Bajorath
Journal:  J Comput Aided Mol Des       Date:  2022-03-19       Impact factor: 4.179

3.  In silico investigation of potential SRC kinase ligands from traditional Chinese medicine.

Authors:  Weng Ieong Tou; Calvin Yu-Chian Chen
Journal:  PLoS One       Date:  2012-03-21       Impact factor: 3.240

4.  Drug design for neuropathic pain regulation from traditional Chinese medicine.

Authors:  Weng Ieong Tou; Su-Sen Chang; Cheng-Chun Lee; Calvin Yu-Chian Chen
Journal:  Sci Rep       Date:  2013-01-30       Impact factor: 4.379

  4 in total

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