Literature DB >> 20366455

Model accounting for the effects of pulling-device stiffness in the analyses of single-molecule force measurements.

Arijit Maitra1, Gaurav Arya.   

Abstract

Single-molecule force spectroscopy provides a powerful approach for investigating molecular transitions along specific reaction coordinates. Here, we present a general analytical model for extracting the intrinsic rates and activation free energies from force measurements on single molecules that is applicable to a broad range of pulling speeds and device stiffnesses. This model relaxes existing limitations to perform force measurements with soft pulling devices for proper theoretical analyses and, in fact, allows experiments to specifically exploit device stiffness as a control parameter in addition to pulling speed for a reliable estimation of energetic and kinetic parameters.

Mesh:

Year:  2010        PMID: 20366455     DOI: 10.1103/PhysRevLett.104.108301

Source DB:  PubMed          Journal:  Phys Rev Lett        ISSN: 0031-9007            Impact factor:   9.161


  13 in total

1.  On artifacts in single-molecule force spectroscopy.

Authors:  Pilar Cossio; Gerhard Hummer; Attila Szabo
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-04       Impact factor: 11.205

2.  Bayesian Uncertainty Quantification for Bond Energies and Mobilities Using Path Integral Analysis.

Authors:  Joshua C Chang; Pak-Wing Fok; Tom Chou
Journal:  Biophys J       Date:  2015-09-01       Impact factor: 4.033

3.  A nanomechanical interface to rapid single-molecule interactions.

Authors:  Mingdong Dong; Ozgur Sahin
Journal:  Nat Commun       Date:  2011       Impact factor: 14.919

4.  Stochastic simulation of single-molecule pulling experiments.

Authors:  V K Gupta
Journal:  Eur Phys J E Soft Matter       Date:  2014-10-28       Impact factor: 1.890

5.  Dynamics of forced nucleosome unraveling and role of nonuniform histone-DNA interactions.

Authors:  Irina V Dobrovolskaia; Gaurav Arya
Journal:  Biophys J       Date:  2012-09-05       Impact factor: 4.033

6.  Interpreting the widespread nonlinear force spectra of intermolecular bonds.

Authors:  Raymond W Friddle; Aleksandr Noy; James J De Yoreo
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-06       Impact factor: 11.205

7.  Dynamic force spectroscopy on supported lipid bilayers: effect of temperature and sample preparation.

Authors:  Andrea Alessandrini; Heiko M Seeger; Tommaso Caramaschi; Paolo Facci
Journal:  Biophys J       Date:  2012-07-03       Impact factor: 4.033

8.  Instrumental Effects in the Dynamics of an Ultrafast Folding Protein under Mechanical Force.

Authors:  David De Sancho; Jörg Schönfelder; Robert B Best; Raul Perez-Jimenez; Victor Muñoz
Journal:  J Phys Chem B       Date:  2018-08-21       Impact factor: 2.991

9.  Modulation of a protein-folding landscape revealed by AFM-based force spectroscopy notwithstanding instrumental limitations.

Authors:  Devin T Edwards; Marc-Andre LeBlanc; Thomas T Perkins
Journal:  Proc Natl Acad Sci U S A       Date:  2021-03-23       Impact factor: 12.779

10.  Theory of rapid force spectroscopy.

Authors:  Jakob T Bullerjahn; Sebastian Sturm; Klaus Kroy
Journal:  Nat Commun       Date:  2014-07-31       Impact factor: 14.919

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