Literature DB >> 20365788

Simple electrostatic model applicable to biomolecular recognition.

T P Doerr1, Yi-Kuo Yu.   

Abstract

An exact, analytic solution for a simple electrostatic model applicable to biomolecular recognition is presented. In the model, a layer of high-dielectric constant material (representative of the solvent, water), whose thickness may vary separates two regions of low-dielectric constant material (representative of proteins, DNA, RNA, or similar materials), in each of which is embedded a point charge. For identical charges, the presence of the screening layer always lowers the energy compared to the case of point charges in an infinite medium of low-dielectric constant. Somewhat surprisingly, the presence of a sufficiently thick screening layer also lowers the energy compared to the case of point charges in an infinite medium of high-dielectric constant. For charges of opposite sign, the screening layer always lowers the energy compared to the case of point charges in an infinite medium of either high or low dielectric constant. The behavior of the energy leads to a substantially increased repulsive force between charges of the same sign. The attractive force between charges of opposite signs is weaker than in an infinite medium of low dielectric constant material but stronger than in an infinite medium of high dielectric constant material. The presence of this behavior, which we name asymmetric screening, in the simple system presented here confirms the generality of the behavior that was established in a more complicated system of an arbitrary number of charged dielectric spheres in an infinite solvent.

Entities:  

Mesh:

Substances:

Year:  2010        PMID: 20365788      PMCID: PMC3271800          DOI: 10.1103/PhysRevE.81.031925

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  9 in total

1.  Some factors in the interpretation of protein denaturation.

Authors:  W KAUZMANN
Journal:  Adv Protein Chem       Date:  1959

2.  On a class of integrals of Legendre polynomials with complicated arguments--with applications in electrostatics and biomolecular modeling.

Authors:  Yi-Kuo Yu
Journal:  Physica A       Date:  2003-08-15       Impact factor: 3.263

Review 3.  Interfaces and the driving force of hydrophobic assembly.

Authors:  David Chandler
Journal:  Nature       Date:  2005-09-29       Impact factor: 49.962

4.  Electrostatics of charged dielectric spheres with application to biological systems.

Authors:  T P Doerr; Yi-Kuo Yu
Journal:  Phys Rev E Stat Nonlin Soft Matter Phys       Date:  2006-06-02

5.  A numerical study of the electrostatic properties of two finite-width charged dielectric slabs in water.

Authors:  Y S Jho; M W Kim; P A Pincus; Frank L H Brown
Journal:  J Chem Phys       Date:  2008-10-07       Impact factor: 3.488

Review 6.  Electrostatic interactions in membranes and proteins.

Authors:  B H Honig; W L Hubbell; R F Flewelling
Journal:  Annu Rev Biophys Biophys Chem       Date:  1986

7.  Energy of an ion crossing a low dielectric membrane: solutions to four relevant electrostatic problems.

Authors:  A Parsegian
Journal:  Nature       Date:  1969-03-01       Impact factor: 49.962

Review 8.  Classical electrostatics in biology and chemistry.

Authors:  B Honig; A Nicholls
Journal:  Science       Date:  1995-05-26       Impact factor: 47.728

Review 9.  Do we underestimate the importance of water in cell biology?

Authors:  Martin Chaplin
Journal:  Nat Rev Mol Cell Biol       Date:  2006-09-06       Impact factor: 94.444

  9 in total
  1 in total

1.  Electrical interactions in the cell: Asymmetric screening in a watery antiverse.

Authors:  T P Doerr; Yi-Kuo Yu
Journal:  Am J Phys       Date:  2014-05-01       Impact factor: 1.022

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.