Literature DB >> 20365786

Direct evidence of the multidimensionality of the free-energy landscapes of proteins revealed by mechanical probes.

Zu Thur Yew1, Michael Schlierf, Matthias Rief, Emanuele Paci.   

Abstract

The study of mechanical unfolding, through the combined efforts of atomic force microscopy and simulation, is yielding fresh insights into the free-energy landscapes of proteins. Thus far, experiments have been mostly analyzed with one-dimensional models of the free-energy landscape. We show that as the two ends of a protein, filamin, are pulled apart at a speed tending to zero, the measured mechanical strength plateaus at approximately 30 pN instead of going toward zero, deviating from the Bell model. The deviation can only be explained by a switch between parallel pathways. Insightful analysis of mechanical unfolding kinetics needs to account for the multidimensionality of the free-energy landscapes of proteins, which are crucial for understanding the behavior of proteins under the small forces experienced in vivo.

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Year:  2010        PMID: 20365786     DOI: 10.1103/PhysRevE.81.031923

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  8 in total

1.  The molten globule state is unusually deformable under mechanical force.

Authors:  Phillip J Elms; John D Chodera; Carlos Bustamante; Susan Marqusee
Journal:  Proc Natl Acad Sci U S A       Date:  2012-02-21       Impact factor: 11.205

2.  Effect of loading conditions on the dissociation behaviour of catch bond clusters.

Authors:  L Sun; Q H Cheng; H J Gao; Y W Zhang
Journal:  J R Soc Interface       Date:  2011-09-21       Impact factor: 4.118

3.  Mechanically unfolding protein L using a laser-feedback-controlled cantilever.

Authors:  Neal Crampton; Khalid Alzahrani; Godfrey S Beddard; Simon D Connell; David J Brockwell
Journal:  Biophys J       Date:  2011-04-06       Impact factor: 4.033

4.  Direct quantification of the attempt frequency determining the mechanical unfolding of ubiquitin protein.

Authors:  Ionel Popa; Julio M Fernández; Sergi Garcia-Manyes
Journal:  J Biol Chem       Date:  2011-07-16       Impact factor: 5.157

5.  Molecular Simulations Suggest a Force-Dependent Mechanism of Vinculin Activation.

Authors:  Li Sun; Jeffrey K Noel; Herbert Levine; José N Onuchic
Journal:  Biophys J       Date:  2017-10-17       Impact factor: 4.033

6.  Complex unfolding kinetics of single-domain proteins in the presence of force.

Authors:  Michael Schlierf; Zu Thur Yew; Matthias Rief; Emanuele Paci
Journal:  Biophys J       Date:  2010-09-08       Impact factor: 4.033

7.  Mechanical unfolding of spectrin reveals a super-exponential dependence of unfolding rate on force.

Authors:  J P Renn; S Bhattacharyya; H Bai; C He; H Li; A F Oberhauser; J F Marko; D E Makarov; A Matouschek
Journal:  Sci Rep       Date:  2019-07-31       Impact factor: 4.379

8.  Multiplexed protein force spectroscopy reveals equilibrium protein folding dynamics and the low-force response of von Willebrand factor.

Authors:  Achim Löf; Philipp U Walker; Steffen M Sedlak; Sophia Gruber; Tobias Obser; Maria A Brehm; Martin Benoit; Jan Lipfert
Journal:  Proc Natl Acad Sci U S A       Date:  2019-08-28       Impact factor: 11.205

  8 in total

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