Literature DB >> 20365323

First-passage distributions in a collective model of anomalous diffusion with tunable exponent.

Assaf Amitai1, Yacov Kantor, Mehran Kardar.   

Abstract

We consider a model system in which anomalous diffusion is generated by superposition of underlying linear modes with a broad range of relaxation times. In the language of Gaussian polymers, our model corresponds to Rouse (Fourier) modes whose friction coefficients scale as wave number to the power 2-z. A single (tagged) monomer then executes subdiffusion over a broad range of time scales, and its mean square displacement increases as t(alpha) with alpha = 1/z. To demonstrate nontrivial aspects of the model, we numerically study the absorption of the tagged particle in one dimension near an absorbing boundary or in the interval between two such boundaries. We obtain absorption probability densities as a function of time, as well as the position-dependent distribution for unabsorbed particles, at several values of alpha. Each of these properties has features characterized by exponents that depend on alpha. Characteristic distributions found for different values of alpha have similar qualitative features, but are not simply related quantitatively. Comparison of the motion of translocation coordinate of a polymer moving through a pore in a membrane with the diffusing tagged monomer with identical alpha also reveals quantitative differences.

Year:  2010        PMID: 20365323     DOI: 10.1103/PhysRevE.81.011107

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  3 in total

Review 1.  Chromosome Conformation Capture and Beyond: Toward an Integrative View of Chromosome Structure and Function.

Authors:  Rachel Patton McCord; Noam Kaplan; Luca Giorgetti
Journal:  Mol Cell       Date:  2020-01-27       Impact factor: 17.970

Review 2.  The mechanobiology of nuclear phase separation.

Authors:  Daniel S W Lee; Amy R Strom; Clifford P Brangwynne
Journal:  APL Bioeng       Date:  2022-04-28

3.  Structural Fluctuations of the Chromatin Fiber within Topologically Associating Domains.

Authors:  Guido Tiana; Assaf Amitai; Tim Pollex; Tristan Piolot; David Holcman; Edith Heard; Luca Giorgetti
Journal:  Biophys J       Date:  2016-03-29       Impact factor: 4.033

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.