Literature DB >> 20365236

Evolutionary dynamics on networks of selectively neutral genotypes: effects of topology and sequence stability.

Jacobo Aguirre1, Javier M Buldú, Susanna C Manrubia.   

Abstract

Networks of selectively neutral genotypes underlie the evolution of populations of replicators in constant environments. Previous theoretical analysis predicted that such populations will evolve toward highly connected regions of the genome space. We first study the evolution of populations of replicators on simple networks and quantify how the transient time to equilibrium depends on the initial distribution of sequences on the neutral network, on the topological properties of the latter, and on the mutation rate. Second, network neutrality is broken through the introduction of an energy for each sequence. This allows to study the competition between two features (neutrality and energetic stability) relevant for survival and subjected to different selective pressures. In cases where the two features are negatively correlated, the population experiences sudden migrations in the genome space for values of the relevant parameters that we calculate. The numerical study of larger networks indicates that the qualitative behavior to be expected in more realistic cases is already seen in representative examples of small networks.

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Year:  2009        PMID: 20365236     DOI: 10.1103/PhysRevE.80.066112

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  7 in total

1.  Evolution on neutral networks accelerates the ticking rate of the molecular clock.

Authors:  Susanna Manrubia; José A Cuesta
Journal:  J R Soc Interface       Date:  2015-01-06       Impact factor: 4.118

2.  Topological structure of the space of phenotypes: the case of RNA neutral networks.

Authors:  Jacobo Aguirre; Javier M Buldú; Michael Stich; Susanna C Manrubia
Journal:  PLoS One       Date:  2011-10-18       Impact factor: 3.240

3.  Tipping points and early warning signals in the genomic composition of populations induced by environmental changes.

Authors:  Jacobo Aguirre; Susanna Manrubia
Journal:  Sci Rep       Date:  2015-05-12       Impact factor: 4.379

4.  Competition among networks highlights the power of the weak.

Authors:  Jaime Iranzo; Javier M Buldú; Jacobo Aguirre
Journal:  Nat Commun       Date:  2016-11-14       Impact factor: 14.919

5.  Adaptive multiscapes: an up-to-date metaphor to visualize molecular adaptation.

Authors:  Pablo Catalán; Clemente F Arias; Jose A Cuesta; Susanna Manrubia
Journal:  Biol Direct       Date:  2017-02-28       Impact factor: 4.540

Review 6.  On the networked architecture of genotype spaces and its critical effects on molecular evolution.

Authors:  Jacobo Aguirre; Pablo Catalán; José A Cuesta; Susanna Manrubia
Journal:  Open Biol       Date:  2018-07       Impact factor: 6.411

7.  The space of genotypes is a network of networks: implications for evolutionary and extinction dynamics.

Authors:  Pablo Yubero; Susanna Manrubia; Jacobo Aguirre
Journal:  Sci Rep       Date:  2017-10-23       Impact factor: 4.379

  7 in total

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