Literature DB >> 20365053

Community detection algorithms: a comparative analysis.

Andrea Lancichinetti1, Santo Fortunato.   

Abstract

Uncovering the community structure exhibited by real networks is a crucial step toward an understanding of complex systems that goes beyond the local organization of their constituents. Many algorithms have been proposed so far, but none of them has been subjected to strict tests to evaluate their performance. Most of the sporadic tests performed so far involved small networks with known community structure and/or artificial graphs with a simplified structure, which is very uncommon in real systems. Here we test several methods against a recently introduced class of benchmark graphs, with heterogeneous distributions of degree and community size. The methods are also tested against the benchmark by Girvan and Newman [Proc. Natl. Acad. Sci. U.S.A. 99, 7821 (2002)] and on random graphs. As a result of our analysis, three recent algorithms introduced by Rosvall and Bergstrom [Proc. Natl. Acad. Sci. U.S.A. 104, 7327 (2007); Proc. Natl. Acad. Sci. U.S.A. 105, 1118 (2008)], Blondel [J. Stat. Mech.: Theory Exp. (2008), P10008], and Ronhovde and Nussinov [Phys. Rev. E 80, 016109 (2009)] have an excellent performance, with the additional advantage of low computational complexity, which enables one to analyze large systems.

Mesh:

Year:  2009        PMID: 20365053     DOI: 10.1103/PhysRevE.80.056117

Source DB:  PubMed          Journal:  Phys Rev E Stat Nonlin Soft Matter Phys        ISSN: 1539-3755


  186 in total

1.  Detecting hidden spatial and spatio-temporal structures in glasses and complex physical systems by multiresolution network clustering.

Authors:  P Ronhovde; S Chakrabarty; D Hu; M Sahu; K K Sahu; K F Kelton; N A Mauro; Z Nussinov
Journal:  Eur Phys J E Soft Matter       Date:  2011-09-29       Impact factor: 1.890

2.  Spatial correlations in attribute communities.

Authors:  Federica Cerina; Vincenzo De Leo; Marc Barthelemy; Alessandro Chessa
Journal:  PLoS One       Date:  2012-05-29       Impact factor: 3.240

3.  Link communities reveal multiscale complexity in networks.

Authors:  Yong-Yeol Ahn; James P Bagrow; Sune Lehmann
Journal:  Nature       Date:  2010-06-20       Impact factor: 49.962

4.  The modular and integrative functional architecture of the human brain.

Authors:  Maxwell A Bertolero; B T Thomas Yeo; Mark D'Esposito
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

5.  Inference and Analysis of Population Structure Using Genetic Data and Network Theory.

Authors:  Gili Greenbaum; Alan R Templeton; Shirli Bar-David
Journal:  Genetics       Date:  2016-02-17       Impact factor: 4.562

6.  Processing of natural sounds: characterization of multipeak spectral tuning in human auditory cortex.

Authors:  Michelle Moerel; Federico De Martino; Roberta Santoro; Kamil Ugurbil; Rainer Goebel; Essa Yacoub; Elia Formisano
Journal:  J Neurosci       Date:  2013-07-17       Impact factor: 6.167

7.  Infomap Bioregions: Interactive Mapping of Biogeographical Regions from Species Distributions.

Authors:  Daniel Edler; Thaís Guedes; Alexander Zizka; Martin Rosvall; Alexandre Antonelli
Journal:  Syst Biol       Date:  2017-03-01       Impact factor: 15.683

8.  Network medicine analysis of chondrocyte proteins towards new treatments of osteoarthritis.

Authors:  Jose C Nacher; Benjamin Keith; Jean-Marc Schwartz
Journal:  Proc Biol Sci       Date:  2014-01-15       Impact factor: 5.349

9.  Native states of fast-folding proteins are kinetic traps.

Authors:  Alex Dickson; Charles L Brooks
Journal:  J Am Chem Soc       Date:  2013-03-15       Impact factor: 15.419

10.  A Guide for Choosing Community Detection Algorithms in Social Network Studies: The Question Alignment Approach.

Authors:  Natalie R Smith; Paul N Zivich; Leah M Frerichs; James Moody; Allison E Aiello
Journal:  Am J Prev Med       Date:  2020-10       Impact factor: 5.043

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.