Literature DB >> 2036422

Importance of hydrogen-bonding interactions involving the side chain of Asp158 in the catalytic mechanism of papain.

R Ménard1, H E Khouri, C Plouffe, P Laflamme, R Dupras, T Vernet, D C Tessier, D Y Thomas, A C Storer.   

Abstract

In a previous study, it was shown that replacing Asp158 in papain by Asn had little effect on activity and that the negatively charged carboxylate of Asp158 does not significantly stabilize the active site thiolate-imidazolium ion pair of papain (Ménard et al., 1990). In this paper, we report the kinetic characterization of three more mutants at this position: Asp158Gly, Asp158Ala, and Asp158Glu. From the pH-activity profiles of these and other mutants of papain, it has been possible to develop a model that enables us to dissect out the contribution of the various mutations toward (i) intrinsic activity, (ii) ion pair stability, and (iii) the electrostatic potential at the active site. Results obtained with mutants that place either Gly or Ala at position 158 indicate that the hydrogen bonds involving the side chain of Asp158 in wild-type papain are indirectly important for enzyme activity. When CBZ-Phe-Arg-MCA is used as a substrate, the (kcat/KM)obs values at pH 6.5 are 3650 and 494 M-1 s-1 for Asp158Gly and Asp158Ala, respectively, as compared to 119,000 M-1 s-1 for papain. Results with the Asp158Glu mutant suggest that the side chain of Glu moves closer to the active site and cannot form hydrogen bonds similar to those involving Asp158 in papain. From the four mutations introduced at position 158 in papain, we can conclude that it is not the charge but the hydrogen-bonding interactions involving the side chain of Asp158 that contribute the most to the stabilization of the thiolate-imidazolium ion pair in papain. However, the charge and the hydrogen bonds of Asp158 both contribute to the intrinsic activity of the enzyme.

Entities:  

Mesh:

Substances:

Year:  1991        PMID: 2036422     DOI: 10.1021/bi00236a028

Source DB:  PubMed          Journal:  Biochemistry        ISSN: 0006-2960            Impact factor:   3.162


  12 in total

1.  Evaluation of hydrogen-bonding and enantiomeric P2-S2 hydrophobic contacts in dynamic aspects of molecular recognition by papain.

Authors:  M Patel; I S Kayani; W Templeton; G W Mellor; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1992-11-01       Impact factor: 3.857

2.  Clarification of the pH-dependent kinetic behaviour of papain by using reactivity probes and analysis of alkylation and catalysed acylation reactions in terms of multihydronic state models: implications for electrostatics calculations and interpretation of the consequences of site-specific mutations such as Asp-158-Asn and Asp-158-Glu.

Authors:  G W Mellor; M Patel; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1993-08-15       Impact factor: 3.857

3.  Conserved water-mediated H-bonding dynamics of catalytic His159 and Asp158: insight into a possible acid-base coupled mechanism in plant thiol protease.

Authors:  Tapas K Nandi; Hridoy R Bairagya; Bishnu P Mukhopadhyay; Payel Mallik; Dipankar Sukul; Asim K Bera
Journal:  J Mol Model       Date:  2011-11-09       Impact factor: 1.810

4.  Ionization characteristics and chemical influences of aspartic acid residue 158 of papain and caricain determined by structure-related kinetic and computational techniques: multiple electrostatic modulators of active-centre chemistry.

Authors:  M A Noble; S Gul; C S Verma; K Brocklehurst
Journal:  Biochem J       Date:  2000-11-01       Impact factor: 3.857

5.  Lecithin retinol acyltransferase is a founder member of a novel family of enzymes.

Authors:  Wan Jin Jahng; Linlong Xue; Robert R Rando
Journal:  Biochemistry       Date:  2003-11-11       Impact factor: 3.162

6.  Ionization characteristics of the Cys-25/His-159 interactive system and of the modulatory group of papain: resolution of ambiguity by electronic perturbation of the quasi-2-mercaptopyridine leaving group in a new pyrimidyl disulphide reactivity probe.

Authors:  G W Mellor; E W Thomas; C M Topham; K Brocklehurst
Journal:  Biochem J       Date:  1993-02-15       Impact factor: 3.857

7.  Catalytic-site characteristics of the porcine calpain II 80 kDa/18 kDa heterodimer revealed by selective reaction of its essential thiol group with two-hydronic-state time-dependent inhibitors: evidence for a catalytic site Cys/His interactive system and an ionizing modulatory group.

Authors:  G W Mellor; S K Sreedharan; D Kowlessur; E W Thomas; K Brocklehurst
Journal:  Biochem J       Date:  1993-02-15       Impact factor: 3.857

8.  Purification and characterization of multiple forms of the pineapple-stem-derived cysteine proteinases ananain and comosain.

Authors:  A D Napper; S P Bennett; M Borowski; M B Holdridge; M J Leonard; E E Rogers; Y Duan; R A Laursen; B Reinhold; S L Shames
Journal:  Biochem J       Date:  1994-08-01       Impact factor: 3.857

9.  Roles of Ser101, Asp236, and His237 in catalysis of thioesterase II and of the C-terminal region of the enzyme in its interaction with fatty acid synthase.

Authors:  M H Tai; S S Chirala; S J Wakil
Journal:  Proc Natl Acad Sci U S A       Date:  1993-03-01       Impact factor: 11.205

10.  Challenging a paradigm: theoretical calculations of the protonation state of the Cys25-His159 catalytic diad in free papain.

Authors:  Michael Shokhen; Netaly Khazanov; Amnon Albeck
Journal:  Proteins       Date:  2009-12
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.