Literature DB >> 20361766

Urea-induced drying of carbon nanotubes suggests existence of a dry globule-like transient state during chemical denaturation of proteins.

Payel Das1, Ruhong Zhou.   

Abstract

Atomistic dynamics simulations of purely hydrophobic carbon nanotubes in 8 M urea are performed to dissect the role of dispersion interactions in the denaturing power of urea. The enhanced population of urea and a paucity of water in proximity of nanotubes suggest that the stronger dispersion interaction of urea than water with nanotube triggers drying of its interior. The preferential intrusion of urea over water within nanotube interiors irrespective of their diameters directly implies a "dry globule"-like transient intermediate formation in the initial stage of protein unfolding in urea.

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Year:  2010        PMID: 20361766     DOI: 10.1021/jp911444q

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  10 in total

1.  Comment on "urea-mediated protein denaturation: a consensus view".

Authors:  Ruhong Zhou; Jingyuan Li; Lan Hua; Zaixing Yang; B J Berne
Journal:  J Phys Chem B       Date:  2011-01-19       Impact factor: 2.991

2.  Critical Dipole Length for the Wetting Transition Due to Collective Water-dipoles Interactions.

Authors:  Chunlei Wang; Bo Zhou; Yusong Tu; Manyi Duan; Peng Xiu; Jingye Li; Haiping Fang
Journal:  Sci Rep       Date:  2012-04-11       Impact factor: 4.379

3.  The role of basic residues in the adsorption of blood proteins onto the graphene surface.

Authors:  Zonglin Gu; Zaixing Yang; Lingle Wang; Hong Zhou; Camilo A Jimenez-Cruz; Ruhong Zhou
Journal:  Sci Rep       Date:  2015-06-02       Impact factor: 4.379

4.  EGCG in Green Tea Induces Aggregation of HMGB1 Protein through Large Conformational Changes with Polarized Charge Redistribution.

Authors:  Xuan-Yu Meng; Baoyu Li; Shengtang Liu; Hongsuk Kang; Lin Zhao; Ruhong Zhou
Journal:  Sci Rep       Date:  2016-02-22       Impact factor: 4.379

5.  An In Silico study of TiO2 nanoparticles interaction with twenty standard amino acids in aqueous solution.

Authors:  Shengtang Liu; Xuan-Yu Meng; Jose Manuel Perez-Aguilar; Ruhong Zhou
Journal:  Sci Rep       Date:  2016-11-24       Impact factor: 4.379

6.  Molecular Structure and Dynamics of Water on Pristine and Strained Phosphorene: Wetting and Diffusion at Nanoscale.

Authors:  Wei Zhang; Chao Ye; Linbi Hong; Zaixing Yang; Ruhong Zhou
Journal:  Sci Rep       Date:  2016-12-06       Impact factor: 4.379

7.  Overcoming the crystallization and designability issues in the ultrastable zirconium phosphonate framework system.

Authors:  Tao Zheng; Zaixing Yang; Daxiang Gui; Zhiyong Liu; Xiangxiang Wang; Xing Dai; Shengtang Liu; Linjuan Zhang; Yang Gao; Lanhua Chen; Daopeng Sheng; Yanlong Wang; Juan Diwu; Jianqiang Wang; Ruhong Zhou; Zhifang Chai; Thomas E Albrecht-Schmitt; Shuao Wang
Journal:  Nat Commun       Date:  2017-05-30       Impact factor: 14.919

8.  Graphene-Induced Pore Formation on Cell Membranes.

Authors:  Guangxin Duan; Yuanzhao Zhang; Binquan Luan; Jeffrey K Weber; Royce W Zhou; Zaixing Yang; Lin Zhao; Jiaying Xu; Judong Luo; Ruhong Zhou
Journal:  Sci Rep       Date:  2017-02-20       Impact factor: 4.379

9.  Differential Pd-nanocrystal facets demonstrate distinct antibacterial activity against Gram-positive and Gram-negative bacteria.

Authors:  Ge Fang; Weifeng Li; Xiaomei Shen; Jose Manuel Perez-Aguilar; Yu Chong; Xingfa Gao; Zhifang Chai; Chunying Chen; Cuicui Ge; Ruhong Zhou
Journal:  Nat Commun       Date:  2018-01-09       Impact factor: 14.919

10.  Robust Denaturation of Villin Headpiece by MoS2 Nanosheet: Potential Molecular Origin of the Nanotoxicity.

Authors:  Zonglin Gu; Zaixing Yang; Seung-Gu Kang; Jerry R Yang; Judong Luo; Ruhong Zhou
Journal:  Sci Rep       Date:  2016-06-17       Impact factor: 4.379

  10 in total

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