Literature DB >> 20360022

Letter to the editor: Stability of Random Forest importance measures.

M Luz Calle, Víctor Urrea.   

Abstract

The goal of this article (letter to the editor) is to emphasize the value of exploring ranking stability when using the importance measures, mean decrease accuracy (MDA) and mean decrease Gini (MDG), provided by Random Forest. We illustrate with a real and a simulated example that ranks based on the MDA are unstable to small perturbations of the dataset and ranks based on the MDG provide more robust results.

Mesh：

Year:  2010        PMID： 20360022     DOI： 10.1093/bib/bbq011

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN： 1467-5463            Impact factor:   11.622


  54 in total

1.  Multiplexed homogeneous proximity ligation assays for high-throughput protein biomarker research in serological material.

Authors:  Martin Lundberg; Stine Buch Thorsen; Erika Assarsson; Andrea Villablanca; Bonnie Tran; Nick Gee; Mick Knowles; Birgitte Sander Nielsen; Eduardo González Couto; Roberto Martin; Olle Nilsson; Christian Fermer; Jörg Schlingemann; Ib Jarle Christensen; Hans-Jorgen Nielsen; Björn Ekström; Claes Andersson; Mats Gustafsson; Nils Brunner; Jan Stenvang; Simon Fredriksson
Journal:  Mol Cell Proteomics       Date:  2011-01-17       Impact factor: 5.911

2.  Oil in the Sahara: mapping anthropogenic threats to Saharan biodiversity from space.

Authors:  Clare Duncan; Daniela Kretz; Martin Wegmann; Thomas Rabeil; Nathalie Pettorelli
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2014-04-14       Impact factor: 6.237

3.  Cys34 Adductomics Links Colorectal Cancer with the Gut Microbiota and Redox Biology.

Authors:  Hasmik Grigoryan; Courtney Schiffman; Marc J Gunter; Alessio Naccarati; Silvia Polidoro; Sonia Dagnino; Sandrine Dudoit; Paolo Vineis; Stephen M Rappaport
Journal:  Cancer Res       Date:  2019-10-22       Impact factor: 12.701

4.  A General Method for Predicting Amino Acid Residues Experiencing Hydrogen Exchange.

Authors:  Boshen Wang; Alan Perez-Rathke; Renhao Li; Jie Liang
Journal:  IEEE EMBS Int Conf Biomed Health Inform       Date:  2018-04-09

5.  Metabolomics of neonatal blood spots reveal distinct phenotypes of pediatric acute lymphoblastic leukemia and potential effects of early-life nutrition.

Authors:  Lauren M Petrick; Courtney Schiffman; William M B Edmands; Yukiko Yano; Kelsi Perttula; Todd Whitehead; Catherine Metayer; Craig E Wheelock; Manish Arora; Hasmik Grigoryan; Henrik Carlsson; Sandrine Dudoit; Stephen M Rappaport
Journal:  Cancer Lett       Date:  2019-03-20       Impact factor: 8.679

6.  Untargeted adductomics of Cys34 modifications to human serum albumin in newborn dried blood spots.

Authors:  Yukiko Yano; Hasmik Grigoryan; Courtney Schiffman; William Edmands; Lauren Petrick; Katie Hall; Todd Whitehead; Catherine Metayer; Sandrine Dudoit; Stephen Rappaport
Journal:  Anal Bioanal Chem       Date:  2019-02-19       Impact factor: 4.142

7.  Letter to the editor: on the stability and ranking of predictors from random forest variable importance measures.

Authors:  Kristin K Nicodemus
Journal:  Brief Bioinform       Date:  2011-04-15       Impact factor: 11.622

8.  Developing and validating a multivariable prediction model for in-hospital mortality of pneumonia with advanced chronic kidney disease patients: a retrospective analysis using a nationwide database in Japan.

Authors:  Daisuke Takada; Susumu Kunisawa; Takeshi Matsubara; Kiyohide Fushimi; Motoko Yanagita; Yuichi Imanaka
Journal:  Clin Exp Nephrol       Date:  2020-04-15       Impact factor: 2.801

9.  Toward the improvement of trail classification in national parks using the recreation opportunity spectrum approach.

Authors:  Yoshitaka Oishi
Journal:  Environ Manage       Date:  2013-04-25       Impact factor: 3.266

10.  Incorporating space and time into random forest models for analyzing geospatial patterns of drug-related crime incidents in a major U.S. metropolitan area.

Authors:  Zhiyue Xia; Kathleen Stewart; Junchuan Fan
Journal:  Comput Environ Urban Syst       Date:  2021-01-29
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