Literature DB >> 20357093

Whole-genome characterization and genotyping of global WU polyomavirus strains.

Seweryn Bialasiewicz1, Rebecca Rockett, David W Whiley, Yacine Abed, Tobias Allander, Michael Binks, Guy Boivin, Allen C Cheng, Ju-Young Chung, Patricia E Ferguson, Nicole M Gilroy, Amanda J Leach, Cecilia Lindau, John W Rossen, Tania C Sorrell, Michael D Nissen, Theo P Sloots.   

Abstract

Exploration of the genetic diversity of WU polyomavirus (WUV) has been limited in terms of the specimen numbers and particularly the sizes of the genomic fragments analyzed. Using whole-genome sequencing of 48 WUV strains collected in four continents over a 5-year period and 16 publicly available whole-genome sequences, we identified three main WUV clades and five subtypes, provisionally termed Ia, Ib, Ic, II, IIIa, and IIIb. Overall nucleotide variation was low (0 to 1.2%). The discriminatory power of the previous VP2 fragment typing method was found to be limited, and a new, larger genotyping region within the VP2/1 interface was proposed.

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Year:  2010        PMID： 20357093      PMCID： PMC2876659          DOI： 10.1128/JVI.02658-09

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  26 in total

1.  RDP: detection of recombination amongst aligned sequences.

Authors:  D Martin; E Rybicki
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2.  RDP2: recombination detection and analysis from sequence alignments.

Authors:  D P Martin; C Williamson; D Posada
Journal:  Bioinformatics       Date:  2004-09-17       Impact factor: 6.937

3.  Mechanisms of conformational change for a replicative hexameric helicase of SV40 large tumor antigen.

Authors:  Dahai Gai; Rui Zhao; Dawei Li; Carla V Finkielstein; Xiaojiang S Chen
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4.  Application of phylogenetic networks in evolutionary studies.

Authors:  Daniel H Huson; David Bryant
Journal:  Mol Biol Evol       Date:  2005-10-12       Impact factor: 16.240

5.  MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Authors:  Koichiro Tamura; Joel Dudley; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2007-05-07       Impact factor: 16.240

6.  Solution structure of the origin DNA-binding domain of SV40 T-antigen.

Authors:  X Luo; D G Sanford; P A Bullock; W W Bachovchin
Journal:  Nat Struct Biol       Date:  1996-12

7.  Detection of BK, JC, WU, or KI polyomaviruses in faecal, urine, blood, cerebrospinal fluid and respiratory samples.

Authors:  Seweryn Bialasiewicz; David M Whiley; Stephen B Lambert; Michael D Nissen; Theo P Sloots
Journal:  J Clin Virol       Date:  2009-06-09       Impact factor: 3.168

8.  Identification of a third human polyomavirus.

Authors:  Tobias Allander; Kalle Andreasson; Shawon Gupta; Annelie Bjerkner; Gordana Bogdanovic; Mats A A Persson; Tina Dalianis; Torbjörn Ramqvist; Björn Andersson
Journal:  J Virol       Date:  2007-02-07       Impact factor: 5.103

Review 9.  Common and unique features of T antigens encoded by the polyomavirus group.

Authors:  J M Pipas
Journal:  J Virol       Date:  1992-07       Impact factor: 5.103

10.  Identification of a novel polyomavirus from patients with acute respiratory tract infections.

Authors:  Anne M Gaynor; Michael D Nissen; David M Whiley; Ian M Mackay; Stephen B Lambert; Guang Wu; Daniel C Brennan; Gregory A Storch; Theo P Sloots; David Wang
Journal:  PLoS Pathog       Date:  2007-05-04       Impact factor: 6.823
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  7 in total

1.  African great apes are naturally infected with polyomaviruses closely related to Merkel cell polyomavirus.

Authors:  Fabian H Leendertz; Nelly Scuda; Kenneth N Cameron; Tonny Kidega; Klaus Zuberbühler; Siv Aina J Leendertz; Emmanuel Couacy-Hymann; Christophe Boesch; Sébastien Calvignac; Bernhard Ehlers
Journal:  J Virol       Date:  2010-11-03       Impact factor: 5.103

2.  Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing.

Authors:  Efrem S Lim; Alejandro Reyes; Martin Antonio; Debasish Saha; Usman N Ikumapayi; Mitchell Adeyemi; O Colin Stine; Rebecca Skelton; Daniel C Brennan; Rajhab S Mkakosya; Mark J Manary; Jeffrey I Gordon; David Wang
Journal:  Virology       Date:  2012-12-29       Impact factor: 3.616

3.  Human Washington University Polyomavirus in Patients with Respiratory Tract Infection in Kuwait.

Authors:  Sahar Sultan Essa; Wassim Chehadeh; Widad Al-Nakib
Journal:  Med Princ Pract       Date:  2017-11-07       Impact factor: 1.927

4.  Identification of MW polyomavirus, a novel polyomavirus in human stool.

Authors:  Erica A Siebrasse; Alejandro Reyes; Efrem S Lim; Guoyan Zhao; Rajhab S Mkakosya; Mark J Manary; Jeffrey I Gordon; David Wang
Journal:  J Virol       Date:  2012-06-27       Impact factor: 5.103

5.  Complete Genome Sequence of a Novel Human WU Polyomavirus Isolate Associated with Acute Respiratory Infection.

Authors:  Darrell L Dinwiddie; Walter N Dehority; Kurt C Schwalm; Jesse M Young; Stephen M Gross; Gary P Schroth; Stephen A Young
Journal:  Genome Announc       Date:  2016-05-05

6.  Complete Genome Sequence of a Novel WU Polyomavirus Isolate from Arkansas, USA, Associated with Acute Respiratory Infection.

Authors:  J L Kennedy; J L Denson; K S Schwalm; A N Stoner; J C Kincaid; T J Abramo; T M Thompson; E M Ulloa; S W Burchiel; D L Dinwiddie
Journal:  Genome Announc       Date:  2017-01-12

7.  WU Polyomavirus Infection in Children With Acute Lower Respiratory Tract Infections in China, 2017 to 2019: Case Reports and Multicentre Epidemiological Survey.

Authors:  Hongwei Zhao; Wenmiao Xu; Lijuan Wang; Yun Zhu; Xiaohui Wang; Yingchao Liu; Junhong Ai; Qianyu Feng; Li Deng; Yun Sun; Changchong Li; Rong Jin; Yunxiao Shang; Hengmiao Gao; Suyun Qian; Lili Xu; Zhengde Xie
Journal:  Front Cell Infect Microbiol       Date:  2022-03-11       Impact factor: 5.293
  7 in total

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