Literature DB >> 20351874

Hierarchical image classification in the bioscience literature.

Daehyun Kim1, Hong Yu.   

Abstract

Our previous work has shown that images appearing in bioscience articles can be classified into five types: Gel-Image, Image-of-Thing, Graph, Model, and Mix. For this paper, we explored and analyzed features strongly associated with each image type and developed a hierarchical image classification approach for classifying an image into one of the five types. First, we applied texture features to separate images into two groups: 1) a texture group comprising Gel Image, Image-of-Thing, and Mix, and 2) a non-texture group comprising Graph and Model. We then applied entropy, skewness, and uniformity for the first group, and edge difference, uniformity, and smoothness for the second group to classify images into specific types. Our results show that hierarchical image classification accurately divided images into the two groups during the initial classification and that the overall accuracy of the image classification was higher than that of our previous approach. In particular, the recall of hierarchical image classification was greatly improved due to the high accuracy of the initial classification.

Entities:  

Mesh:

Year:  2009        PMID: 20351874      PMCID: PMC2815366     

Source DB:  PubMed          Journal:  AMIA Annu Symp Proc        ISSN: 1559-4076


  6 in total

1.  Accessing bioscience images from abstract sentences.

Authors:  Hong Yu; Minsuk Lee
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

2.  Integrating image data into biomedical text categorization.

Authors:  Hagit Shatkay; Nawei Chen; Dorothea Blostein
Journal:  Bioinformatics       Date:  2006-07-15       Impact factor: 6.937

3.  Improved recognition of figures containing fluorescence microscope images in online journal articles using graphical models.

Authors:  Yuntao Qian; Robert F Murphy
Journal:  Bioinformatics       Date:  2007-11-22       Impact factor: 6.937

4.  BioText Search Engine: beyond abstract search.

Authors:  Marti A Hearst; Anna Divoli; Harendra Guturu; Alex Ksikes; Preslav Nakov; Michael A Wooldridge; Jerry Ye
Journal:  Bioinformatics       Date:  2007-06-01       Impact factor: 6.937

5.  GoldMiner: a radiology image search engine.

Authors:  Charles E Kahn; Cheng Thao
Journal:  AJR Am J Roentgenol       Date:  2007-06       Impact factor: 3.959

6.  Yale Image Finder (YIF): a new search engine for retrieving biomedical images.

Authors:  Songhua Xu; James McCusker; Michael Krauthammer
Journal:  Bioinformatics       Date:  2008-07-09       Impact factor: 6.937

  6 in total
  4 in total

1.  Automatic figure classification in bioscience literature.

Authors:  Daehyun Kim; Balaji Polepalli Ramesh; Hong Yu
Journal:  J Biomed Inform       Date:  2011-05-27       Impact factor: 6.317

2.  Automatically extracting information needs from complex clinical questions.

Authors:  Yong-gang Cao; James J Cimino; John Ely; Hong Yu
Journal:  J Biomed Inform       Date:  2010-07-27       Impact factor: 6.317

3.  Figure text extraction in biomedical literature.

Authors:  Daehyun Kim; Hong Yu
Journal:  PLoS One       Date:  2011-01-13       Impact factor: 3.240

4.  Categorizing biomedicine images using novel image features and sparse coding representation.

Authors:  Jianqiang Sheng; Songhua Xu; Xiaonan Luo
Journal:  BMC Med Genomics       Date:  2013-11-11       Impact factor: 3.063

  4 in total

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