| Literature DB >> 20350375 |
Linda Verhoef1, Harry Vennema, Wilfrid van Pelt, David Lees, Hendriek Boshuizen, Kathleen Henshilwood, Marion Koopmans.
Abstract
Because secondary transmission masks the connection between sources and outbreaks, estimating the proportion of foodborne norovirus infections is difficult. We studied whether norovirus genotype frequency distributions (genotype profiles) can enhance detection of the sources of foodborne outbreaks. Control measures differ substantially; therefore, differentiating this transmission mode from person-borne or food handler-borne outbreaks is of public health interest. Comparison of bivalve mollusks collected during monitoring (n = 295) and outbreak surveillance strains (n = 2,858) showed 2 distinguishable genotype profiles in 1) human feces and 2) source-contaminated food and bivalve mollusks; genotypes I.2 and I.4 were more frequently detected in foodborne outbreaks. Overall, approximately 21% of all outbreaks were foodborne; further analysis showed that 25% of the outbreaks reported as food handler-associated were probably caused by source contamination of the food.Entities:
Mesh:
Year: 2010 PMID: 20350375 PMCID: PMC3321941 DOI: 10.3201/eid1604.090723
Source DB: PubMed Journal: Emerg Infect Dis ISSN: 1080-6040 Impact factor: 6.883
Number of norovirus strains detected in samples from humans, bivalve mollusks, and food, 1999–2004*
| Genotypes | Human surveillance, no. strains | Bivalve monitoring, no. strains | Total no. strains | ||||||
|---|---|---|---|---|---|---|---|---|---|
| Pol-based | Cap-based | FB-food | FB-feces | FHB | PB | UN | |||
| Genogroups | |||||||||
| I.1 | I.1 | 1 | 8 | 0 | 5 | 18 | 0 | 32 | |
| I.2 | 0 | 6 | 0 | 1 | 32 | 8 | 47 | ||
| I.3 | I.3 | 0 | 8 | 3 | 16 | 80 | 13 | 120 | |
| I.4 | I.4 | 9 | 8 | 1 | 8 | 46 | 86 | 158 | |
| I.5 | 0 | 0 | 0 | 1 | 5 | 3 | 9 | ||
| I.6 | I.6 | 2 | 3 | 1 | 21 | 17 | 25 | 69 | |
| I.7 | 0 | 1 | 0 | 0 | 7 | 2 | 10 | ||
| NA I.a | NA I.a | 0 | 1 | 0 | 0 | 4 | 0 | 5 | |
| II.1 | 0 | 5 | 2 | 12 | 94 | 7 | 120 | ||
| II.2 | II.2 | 0 | 13 | 1 | 27 | 66 | 0 | 107 | |
| II.3 | 0 | 1 | 0 | 1 | 38 | 11 | 51 | ||
| II.3R | II.3 | 0 | 1 | 0 | 1 | 41 | 2 | 45 | |
| II.4 | II.4 | 5 | 47 | 9 | 681 | 584 | 63 | 1,389 | |
| II.5 | 0 | 3 | 0 | 6 | 12 | 0 | 21 | ||
| II.8 | 1 | 0 | 1 | 1 | 13 | 0 | 16 | ||
| NA II.a | 0 | 0 | 0 | 2 | 7 | 0 | 9 | ||
| NA II.c | 0 | 2 | 0 | 8 | 31 | 1 | 42 | ||
| NA II.d | 0 | 1 | 0 | 3 | 8 | 0 | 12 | ||
| IV.1 |
|
| 0 | 2 | 0 | 1 | 8 | 0 | 11 |
| Recombinants | |||||||||
| NA II.b | II.1, II.2, II.3 | 4 | 23 | 1 | 100 | 200 | 63 | 391 | |
| II.1 | II.10 | 0 | 0 | 0 | 8 | 19 | 11 | 38 | |
| II.7 | II.6, II.7 | 2 | 18 | 1 | 19 | 116 | 0 | 156 | |
| Total | 24 | 151 | 20 | 922 | 1,446 | 295 | 2,858 | ||
*Poly, polymerase; cap, capsid; FB-food, foodborne-food, i.e., an outbreak was reported to be caused by food and the outbreak strain was detected in food; FB-feces, foodborne-feces, i.e., an outbreak was reported to be caused by food and the outbreak strain was detected in human feces only; FHB, food handler–borne, i.e., an outbreak was reported to be caused by an infected food handler contaminating the food and the outbreak strain was detected in human feces; PB, person-borne, i.e., an outbreak was reported to be caused by person-to-person transmission and the outbreak strain was detected in human feces; UN, unknown, i.e., the mode of transmission was not reported or was reported to be unknown and the outbreak strain was detected in human feces.
Figure A1Norovirus genotype profiles detected in foodborne outbreaks, showing strains detected in A) food or B) humans; C) person-borne outbreaks; D) food handler–borne outbreaks; E) outbreaks with an unknown mode of transmission; and F) routine monitored bivalve mollusks. The genotypes are sorted for their relevance in unknown outbreaks.
ρ1, ρ2, and Cramer V results with simulated p values (20,000 replications) of norovirus 6 genotype patterns as detected in routinely tested bivalve shellfish and during norovirus outbreaks, 1999–-2004*
| Source | FB-food (p value) | FB-feces (p value) | FHB (p value) | PB (p value) | UN (p value) | Bivalve mollusk (p value) |
|---|---|---|---|---|---|---|
| FB-food | ||||||
| ρ1 | 1.00 | 0.48 (0.02) | 0.40 (0.07) | 0.43 (0.04) | 0.48 (0.02) | 0.91 (<0.01) |
| ρ2 | 0.46 (0.03) | −0.15 (0.51) | 0.34 (0.12) | 0.24 (0.26) | 0.47 (0.03) | |
| Cramer V |
| 0.47 (0.01) | 0.62 (0.04) | 0.48 (<0.01) | 0.26 (<0.01) | 0.41 (0.02) |
| FB-feces | ||||||
| ρ1 | 1.00 | 0.93 (<0.01) | 0.92 (<0.01) | 0.96 (<0.01) | 0.53 (0.01) | |
| ρ2 | 0.40 (0.06) | 0.55 (<0.01) | 0.66 (<0.01) | 0.69 (<0.01) | ||
| Cramer V |
|
| 0.34 (0.41) | 0.43 (<0.01) | 0.19 (<0.01) | 0.57 (<0.01) |
| FHB | ||||||
| ρ1 | 1.00 | 0.97 (<0.01) | 0.93 (<0.01) | 0.43 (<0.05) | ||
| ρ2 | 0.22 (0.32) | 0.39 (0.07) | 0.47 (0.03) | |||
| Cramer V |
|
|
| 0.25 (<0.01) | 0.09 (0.75) | 0.46 (<0.01) |
| PB | ||||||
| ρ1 | 1.00 | 0.96 (<0.01) | 0.51 (0.01) | |||
| ρ2 | 0.61 (<0.01) | 0.53 (0.01) | ||||
| Cramer V |
|
|
|
| 0.42 (<0.01) | 0.63 (0.01) |
| UN | ||||||
| ρ1 | 1.00 | 0.59 (<0.01) | ||||
| ρ2 | 0.65 (<0.01) | |||||
| Cramer V |
|
|
|
|
| 0.48 (<0.01) |
| Bivalve mollusk | 1.00 |
*ρ1 = based on frequencies; ρ2 = based on logarithm of frequencies; Cramer V, χ2 test with simulated p values; FB-food, foodborne-food, i.e., an outbreak was reported to be caused by food and the outbreak strain was detected in food; FB-feces, foodborne-feces, i.e., an outbreak was reported to be caused by food and the outbreak strain was detected in human feces only; FHB, food handler–borne, i.e., an outbreak was reported to be caused by an infected food handler contaminating the food and the outbreak strain was detected in human feces; PB, person-borne, i.e., an outbreak was reported to be caused by person-to-person transmission and the outbreak; strain was detected in human feces; UN, unknown, i.e., the mode of transmission was not reported or was reported to be unknown and the outbreak strain was detected in human feces.
Figure A2Estimated proportion of norovirus genotypes based on proportions as detected in foodborne outbreaks (i.e., detected in food or humans; gray bars) and person-borne outbreaks (white bars). *Indicates significance.