Literature DB >> 20348465

Velocity response curves support the role of continuous entrainment in circadian clocks.

Stephanie R Taylor1, Alexis B Webb, Katherine S Smith, Linda R Petzold, Francis J Doyle.   

Abstract

Circadian clocks drive endogenous oscillations in organisms across the tree of life. The Earth's daily light/dark cycle entrains these clocks to the environment. Two major theories of light entrainment have been presented in the literature. The discrete theory emphasizes the instantaneous phase-shifting behavior of short pulses of light, and the continuous theory emphasizes changes to the period of oscillations in constant-light conditions. Historically, the primary tool for predicting and understanding discrete entrainment has been the PRC, which measures discrete adjustments to the clock's phase. The authors present a unified theory, which relies on a velocity response curve (VRC), similar in shape to a PRC, but that describes continuous adjustments to the clock's speed. The VRC explains data from both discrete and continuous light experiments and is therefore an invaluable tool to understand entrainment. The authors relate VRC features to specific entrainment behaviors, such as seasonal adjustments to the phase of entrainment. Furthermore, they estimate a VRC from PRC data and successfully reproduce additional PRC data. Finally, they entrain a VRC-based model to natural light/dark cycles, demonstrating the unified theory's ability to predict clock behavior in the face of a fluctuating signal. The results indicate that a VRC-based model not only provides a comprehensive understanding of entrainment but also has excellent predictive capabilities.

Mesh:

Year:  2010        PMID: 20348465     DOI: 10.1177/0748730409360949

Source DB:  PubMed          Journal:  J Biol Rhythms        ISSN: 0748-7304            Impact factor:   3.182


  8 in total

1.  Photic entrainment of period mutant mice is predicted from their phase response curves.

Authors:  Julie S Pendergast; Rio C Friday; Shin Yamazaki
Journal:  J Neurosci       Date:  2010-09-08       Impact factor: 6.167

2.  The duper mutation reveals previously unsuspected functions of Cryptochrome 1 in circadian entrainment and heart disease.

Authors:  Chip Sisson; Michael Seifu Bahiru; Emily N C Manoogian; Eric L Bittman
Journal:  Proc Natl Acad Sci U S A       Date:  2022-08-05       Impact factor: 12.779

3.  Inhibitory and excitatory networks balance cell coupling in the suprachiasmatic nucleus: A modeling approach.

Authors:  Nathaniel J Kingsbury; Stephanie R Taylor; Michael A Henson
Journal:  J Theor Biol       Date:  2016-03-10       Impact factor: 2.691

4.  Velocity response curves demonstrate the complexity of modeling entrainable clocks.

Authors:  Stephanie R Taylor; Allyson Cheever; Sarah M Harmon
Journal:  J Theor Biol       Date:  2014-09-03       Impact factor: 2.691

Review 5.  Continuous dynamic adjustment of the plant circadian oscillator.

Authors:  Alex A R Webb; Motohide Seki; Akiko Satake; Camila Caldana
Journal:  Nat Commun       Date:  2019-02-01       Impact factor: 14.919

6.  Weakly circadian cells improve resynchrony.

Authors:  Alexis B Webb; Stephanie R Taylor; Kurt A Thoroughman; Francis J Doyle; Erik D Herzog
Journal:  PLoS Comput Biol       Date:  2012-11-29       Impact factor: 4.475

7.  The relationship between stochastic and deterministic quasi-steady state approximations.

Authors:  Jae Kyoung Kim; Krešimir Josić; Matthew R Bennett
Journal:  BMC Syst Biol       Date:  2015-11-23

8.  Entrainment of circadian rhythms to irregular light/dark cycles: a subterranean perspective.

Authors:  Danilo E F L Flôres; Milene G Jannetti; Veronica S Valentinuzzi; Gisele A Oda
Journal:  Sci Rep       Date:  2016-10-04       Impact factor: 4.379

  8 in total

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