Literature DB >> 20348133

Online resources of cancer data: barriers, benefits and lessons.

Emanuela Gadaleta1, Nicholas R Lemoine, Claude Chelala.   

Abstract

With advances in high-throughput techniques, the volume of data generated has resulted in the creation of a plethora of resources for the cancer research community. However, a key factor in the utility, sustainability and future use of a novel resource lies in its ability to allow for data sharing and to be interoperable with major international cancer research efforts. This article will introduce some of these efforts, the interoperable cancer data-mining resources and repositories, from a user-perspective. Some of the considerations to be addressed when building interoperable, sustainable cancer resources will be discussed with case studies-hoping this will prove useful for researchers designing their own cancer databases.

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Year:  2010        PMID: 20348133     DOI: 10.1093/bib/bbq010

Source DB:  PubMed          Journal:  Brief Bioinform        ISSN: 1467-5463            Impact factor:   11.622


  12 in total

Review 1.  Integration and analysis of genome-scale data from gliomas.

Authors:  Gregory Riddick; Howard A Fine
Journal:  Nat Rev Neurol       Date:  2011-07-05       Impact factor: 42.937

Review 2.  Multiscale integration of -omic, imaging, and clinical data in biomedical informatics.

Authors:  John H Phan; Chang F Quo; Chihwen Cheng; May Dongmei Wang
Journal:  IEEE Rev Biomed Eng       Date:  2012

3.  GIDB: a knowledge database for the automated curation and multidimensional analysis of molecular signatures in gastrointestinal cancer.

Authors:  Ying Wang; Yueqian Wang; Shuangkuai Wang; Yuantao Tong; Ling Jin; Hui Zong; Rongbin Zheng; Jinxuan Yang; Zeyu Zhang; En Ouyang; Mengyan Zhou; Xiaoyan Zhang
Journal:  Database (Oxford)       Date:  2019-01-01       Impact factor: 3.451

4.  Grid-enabled measures: using Science 2.0 to standardize measures and share data.

Authors:  Richard P Moser; Bradford W Hesse; Abdul R Shaikh; Paul Courtney; Glen Morgan; Erik Augustson; Sarah Kobrin; Kerry Y Levin; Cynthia Helba; David Garner; Marsha Dunn; Kisha Coa
Journal:  Am J Prev Med       Date:  2011-05       Impact factor: 5.043

5.  Using BioMart as a framework to manage and query pancreatic cancer data.

Authors:  Rosalind J Cutts; Emanuela Gadaleta; Nicholas R Lemoine; Claude Chelala
Journal:  Database (Oxford)       Date:  2011-06-11       Impact factor: 3.451

6.  Impact of caBIG on the European cancer community.

Authors:  R Warden
Journal:  Ecancermedicalscience       Date:  2011-10-03

7.  Leukemia gene atlas--a public platform for integrative exploration of genome-wide molecular data.

Authors:  Katja Hebestreit; Sören Gröttrup; Daniel Emden; Jannis Veerkamp; Christian Ruckert; Hans-Ulrich Klein; Carsten Müller-Tidow; Martin Dugas
Journal:  PLoS One       Date:  2012-06-14       Impact factor: 3.240

8.  A systematic in silico mining of the mechanistic implications and therapeutic potentials of estrogen receptor (ER)-α in breast cancer.

Authors:  Xin Li; Rong Sun; Wanpeng Chen; Bangmin Lu; Xiaoyu Li; Zijie Wang; Jinku Bao
Journal:  PLoS One       Date:  2014-03-10       Impact factor: 3.240

9.  RTCGAToolbox: a new tool for exporting TCGA Firehose data.

Authors:  Mehmet Kemal Samur
Journal:  PLoS One       Date:  2014-09-02       Impact factor: 3.240

Review 10.  Bioinformatics for cancer immunology and immunotherapy.

Authors:  Pornpimol Charoentong; Mihaela Angelova; Mirjana Efremova; Ralf Gallasch; Hubert Hackl; Jerome Galon; Zlatko Trajanoski
Journal:  Cancer Immunol Immunother       Date:  2012-09-18       Impact factor: 6.968

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