Literature DB >> 20335279

Withering away--25,000 years of genetic decline preceded cave bear extinction.

Mathias Stiller, Gennady Baryshnikov, Hervé Bocherens, Aurora Grandal d'Anglade, Brigitte Hilpert, Susanne C Münzel, Ron Pinhasi, Gernot Rabeder, Wilfried Rosendahl, Erik Trinkaus, Michael Hofreiter, Michael Knapp.   

Abstract

The causes of the late Pleistocene megafaunal extinctions are still enigmatic. Although the fossil record can provide approximations for when a species went extinct, the timing of its disappearance alone cannot resolve the causes and mode of the decline preceding its extinction. However, ancient DNA analyses can reveal population size changes over time and narrow down potential causes of extinction. Here, we present an ancient DNA study comparing late Pleistocene population dynamics of two closely related species, cave and brown bears. We found that the decline of cave bears started approximately 25,000 years before their extinction, whereas brown bear population size remained constant. We conclude that neither the effects of climate change nor human hunting alone can be responsible for the decline of the cave bear and suggest that a complex of factors including human competition for cave sites lead to the cave bear's extinction.

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Year:  2010        PMID: 20335279     DOI: 10.1093/molbev/msq083

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  27 in total

1.  A Bayesian phylogenetic method to estimate unknown sequence ages.

Authors:  Beth Shapiro; Simon Y W Ho; Alexei J Drummond; Marc A Suchard; Oliver G Pybus; Andrew Rambaut
Journal:  Mol Biol Evol       Date:  2010-10-01       Impact factor: 16.240

2.  Using ancient DNA and coalescent-based methods to infer extinction.

Authors:  Dan Chang; Beth Shapiro
Journal:  Biol Lett       Date:  2016-02       Impact factor: 3.703

3.  True single-molecule DNA sequencing of a pleistocene horse bone.

Authors:  Ludovic Orlando; Aurelien Ginolhac; Maanasa Raghavan; Julia Vilstrup; Morten Rasmussen; Kim Magnussen; Kathleen E Steinmann; Philipp Kapranov; John F Thompson; Grant Zazula; Duane Froese; Ida Moltke; Beth Shapiro; Michael Hofreiter; Khaled A S Al-Rasheid; M Thomas P Gilbert; Eske Willerslev
Journal:  Genome Res       Date:  2011-07-29       Impact factor: 9.043

4.  Three-dimensional dental topography and feeding ecology in the extinct cave bear.

Authors:  Alejandro Pérez-Ramos; Alejandro Romero; Ernesto Rodriguez; Borja Figueirido
Journal:  Biol Lett       Date:  2020-12-23       Impact factor: 3.703

5.  Understanding Past Population Dynamics: Bayesian Coalescent-Based Modeling with Covariates.

Authors:  Mandev S Gill; Philippe Lemey; Shannon N Bennett; Roman Biek; Marc A Suchard
Journal:  Syst Biol       Date:  2016-07-01       Impact factor: 15.683

6.  Late Pleistocene adult mortality patterns and modern human establishment.

Authors:  Erik Trinkaus
Journal:  Proc Natl Acad Sci U S A       Date:  2011-01-10       Impact factor: 11.205

7.  Species-specific responses of Late Quaternary megafauna to climate and humans.

Authors:  Eline D Lorenzen; David Nogués-Bravo; Ludovic Orlando; Jaco Weinstock; Jonas Binladen; Katharine A Marske; Andrew Ugan; Michael K Borregaard; M Thomas P Gilbert; Rasmus Nielsen; Simon Y W Ho; Ted Goebel; Kelly E Graf; David Byers; Jesper T Stenderup; Morten Rasmussen; Paula F Campos; Jennifer A Leonard; Klaus-Peter Koepfli; Duane Froese; Grant Zazula; Thomas W Stafford; Kim Aaris-Sørensen; Persaram Batra; Alan M Haywood; Joy S Singarayer; Paul J Valdes; Gennady Boeskorov; James A Burns; Sergey P Davydov; James Haile; Dennis L Jenkins; Pavel Kosintsev; Tatyana Kuznetsova; Xulong Lai; Larry D Martin; H Gregory McDonald; Dick Mol; Morten Meldgaard; Kasper Munch; Elisabeth Stephan; Mikhail Sablin; Robert S Sommer; Taras Sipko; Eric Scott; Marc A Suchard; Alexei Tikhonov; Rane Willerslev; Robert K Wayne; Alan Cooper; Michael Hofreiter; Andrei Sher; Beth Shapiro; Carsten Rahbek; Eske Willerslev
Journal:  Nature       Date:  2011-11-02       Impact factor: 49.962

8.  Are Skyline Plot-Based Demographic Estimates Overly Dependent on Smoothing Prior Assumptions?

Authors:  Kris V Parag; Oliver G Pybus; Chieh-Hsi Wu
Journal:  Syst Biol       Date:  2021-12-16       Impact factor: 15.683

9.  The demography of extinction in eastern North American birds.

Authors:  Brian Tilston Smith; Marcelo Gehara; Michael G Harvey
Journal:  Proc Biol Sci       Date:  2021-02-03       Impact factor: 5.349

10.  A Fast and Efficient Single-stranded Genomic Library Preparation Method Optimized for Ancient DNA.

Authors:  Joshua D Kapp; Richard E Green; Beth Shapiro
Journal:  J Hered       Date:  2021-05-24       Impact factor: 2.645

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