Literature DB >> 20300935

Effect of classification procedure on the performance of numerically defined ecological regions.

Ton Snelder1, Anthony Lehmann, Nicolas Lamouroux, John Leathwick, Karin Allenbach.   

Abstract

Ecological regionalizations define geographic regions exhibiting relative homogeneity in ecological (i.e., environmental and biotic) characteristics. Multivariate clustering methods have been used to define ecological regions based on subjectively chosen environmental variables. We developed and tested three procedures for defining ecological regions based on spatial modeling of a multivariate target pattern that is represented by compositional dissimilarities between locations (e.g., taxonomic dissimilarities). The procedures use a "training dataset" representing the target pattern and models this as a function of environmental variables. The model is then extrapolated to the entire domain of interest. Environmental data for our analysis were drawn from a 400 m grid covering all of Switzerland and consisted of 12 variables describing climate, topography and lithology. Our target patterns comprised land cover composition of each grid cell that was derived from interpretation of aerial photographs. For Regionalization 1 we used conventional cluster analysis of the environmental variables to define 60 hierarchically organized levels comprising from 5 to 300 regions. Regionalization 1 provided a base-case for comparison with the model-based regionalizations. Regionalization 2, 3 and 4 also comprised 60 hierarchically organized levels and were derived by modeling land cover composition for 4000 randomly selected "training" cells. Regionalization 2 was based on cluster analysis of environmental variables that were transformed based on a Generalized Dissimilarity Model (GDM). Regionalization 3 and 4 were defined by clustering the training cells based on their land cover composition followed by predictive modeling of the distribution of the land cover clusters using Classification and Regression Tree (CART) and Random Forest (RF) models. Independent test data (i.e. not used to train the models) were used to test the discrimination of land cover composition at all hierarchical levels of the regionalizations using the classification strength (CS) statistic. CS for all the model-based regionalizations was significantly higher than for Regionalization 1. Regionalization 3 and 4 performed significantly better than Regionalization 2 at finer hierarchical levels (many regions) and Regionalization 4 performed significantly better than Regionalization 3 for coarse levels of detail (few regions). Compositional modeling can significantly increase the performance of numerically defined ecological regionalizations. CART and RF-based models appear to produce stronger regionalizations because discriminating variables are able to change at each hierarchic level.

Entities:  

Mesh:

Year:  2010        PMID: 20300935     DOI: 10.1007/s00267-010-9465-7

Source DB:  PubMed          Journal:  Environ Manage        ISSN: 0364-152X            Impact factor:   3.266


  12 in total

Review 1.  Systematic conservation planning.

Authors:  C R Margules; R L Pressey
Journal:  Nature       Date:  2000-05-11       Impact factor: 49.962

2.  The use of an ecologic classification to improve water resource planning in New Zealand.

Authors:  T H Snelder; K F D Hughey
Journal:  Environ Manage       Date:  2005-11       Impact factor: 3.266

3.  Potential of multivariate quantitative methods for delineation and visualization of ecoregions.

Authors:  William W Hargrove; Forrest M Hoffman
Journal:  Environ Manage       Date:  2004       Impact factor: 3.266

Review 4.  Ecoregions and ecoregionalization: geographical and ecological perspectives.

Authors:  Thomas R Loveland; James M Merchant
Journal:  Environ Manage       Date:  2004       Impact factor: 3.266

5.  Development of an ecologic marine classification in the new zealand region.

Authors:  Ton H Snelder; John R Leathwick; Katie L Dey; Ashley A Rowden; Mark A Weatherhead; Graham D Fenwick; Malcolm P Francis; Richard M Gorman; Janet M Grieve; Mark G Hadfield; Judi E Hewitt; Ken M Richardson; Michael J Uddstrom; John R Zeldis
Journal:  Environ Manage       Date:  2007-01       Impact factor: 3.266

6.  Random forests for classification in ecology.

Authors:  D Richard Cutler; Thomas C Edwards; Karen H Beard; Adele Cutler; Kyle T Hess; Jacob Gibson; Joshua J Lawler
Journal:  Ecology       Date:  2007-11       Impact factor: 5.499

7.  A procedure for making optimal selection of input variables for multivariate environmental classifications.

Authors:  Ton H Snelder; Katie L Dey; John R Leathwick
Journal:  Conserv Biol       Date:  2007-04       Impact factor: 6.560

8.  Definition procedures have little effect on performance of environmental classifications of streams and rivers.

Authors:  Ton H Snelder; Hervé Pella; Jean-Gabriel Wasson; Nicolas Lamouroux
Journal:  Environ Manage       Date:  2008-08-15       Impact factor: 3.266

9.  MODELING BRAIN EVOLUTION FROM BEHAVIOR: A PERMUTATIONAL REGRESSION APPROACH.

Authors:  Pierre Legendre; François-Joseph Lapointe; Philippe Casgrain
Journal:  Evolution       Date:  1994-10       Impact factor: 3.694

10.  Error bars in experimental biology.

Authors:  Geoff Cumming; Fiona Fidler; David L Vaux
Journal:  J Cell Biol       Date:  2007-04-09       Impact factor: 10.539

View more
  2 in total

Review 1.  Evaluation of current approaches to stream classification and a heuristic guide to developing classifications of integrated aquatic networks.

Authors:  S J Melles; N E Jones; B J Schmidt
Journal:  Environ Manage       Date:  2014-01-25       Impact factor: 3.266

2.  Remotely-sensed productivity clusters capture global biodiversity patterns.

Authors:  Nicholas C Coops; Sean P Kearney; Douglas K Bolton; Volker C Radeloff
Journal:  Sci Rep       Date:  2018-11-02       Impact factor: 4.379

  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.