Literature DB >> 20298502

Nitrifiers and denitrifiers respond rapidly to changed moisture and increasing temperature in a pristine forest soil.

Ute Szukics1, Guy C J Abell, Verania Hödl, Birgit Mitter, Angela Sessitsch, Evelyn Hackl, Sophie Zechmeister-Boltenstern.   

Abstract

Complete cycling of mineral nitrogen (N) in soil requires the interplay of microorganisms performing nitrification and denitrification, whose activity is increasingly affected by extreme rainfall or heat brought about by climate change. In a pristine forest soil, a gradual increase in soil temperature from 5 to 25 degrees C in a range of water contents stimulated N turnover rates, and N gas emissions were determined by the soil water-filled pore space (WFPS). NO and N(2)O emissions dominated at 30% WFPS and 55% WFPS, respectively, and the step-wise temperature increase resulted in a threefold increase in the NO(3)(-) concentrations and a decrease in the NH(4)(+) concentration. At 70% WFPS, NH(4)(+) accumulated while NO(3)(-) pools declined, indicating gaseous N loss. AmoA- and nirK-gene-based analysis revealed increasing abundance of bacterial ammonia oxidizers (AOB) with increasing soil temperature and a decrease in the abundance of archaeal ammonia oxidizers (AOA) in wet soil at 25 degrees C, suggesting the sensitivity of the latter to anaerobic conditions. Denitrifier (nirK) community structure was most affected by the water content and nirK gene abundance rapidly increased in response to wet conditions until the substrate (NO(3)(-)) became limiting. Shifts in the community structure were most pronounced for nirK and most rapid for AOA, indicating dynamic populations, whereas distinct adaptation of the AOB communities required 5 weeks, suggesting higher stability.

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Year:  2010        PMID: 20298502      PMCID: PMC4339040          DOI: 10.1111/j.1574-6941.2010.00853.x

Source DB:  PubMed          Journal:  FEMS Microbiol Ecol        ISSN: 0168-6496            Impact factor:   4.194


  30 in total

1.  The Structure of Microbial Communities in Soil and the Lasting Impact of Cultivation.

Authors:  D.H. Buckley; T.M. Schmidt
Journal:  Microb Ecol       Date:  2001-07       Impact factor: 4.552

2.  Novel genes for nitrite reductase and Amo-related proteins indicate a role of uncultivated mesophilic crenarchaeota in nitrogen cycling.

Authors:  Alexander H Treusch; Sven Leininger; Arnulf Kletzin; Stephan C Schuster; Hans-Peter Klenk; Christa Schleper
Journal:  Environ Microbiol       Date:  2005-12       Impact factor: 5.491

3.  Specific inhibition of nitrite oxidation by chlorate and its use in assessing nitrification in soils and sediments.

Authors:  L W Belser; E L Mays
Journal:  Appl Environ Microbiol       Date:  1980-03       Impact factor: 4.792

4.  Identification of heterotrophic nitrification in a sierran forest soil.

Authors:  J P Schimel; M K Firestone; K S Killham
Journal:  Appl Environ Microbiol       Date:  1984-10       Impact factor: 4.792

5.  The influence of soil pH on the diversity, abundance and transcriptional activity of ammonia oxidizing archaea and bacteria.

Authors:  Graeme W Nicol; Sven Leininger; Christa Schleper; James I Prosser
Journal:  Environ Microbiol       Date:  2008-08-14       Impact factor: 5.491

6.  Temporal change in nitrous oxide and dinitrogen from denitrification following onset of anaerobiosis.

Authors:  M K Firestone; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  1979-10       Impact factor: 4.792

7.  Comparison of diversities and compositions of bacterial populations inhabiting natural forest soils.

Authors:  Evelyn Hackl; Sophie Zechmeister-Boltenstern; Levente Bodrossy; Angela Sessitsch
Journal:  Appl Environ Microbiol       Date:  2004-09       Impact factor: 4.792

8.  Patterns of community change among ammonia oxidizers in meadow soils upon long-term incubation at different temperatures.

Authors:  Sharon Avrahami; Ralf Conrad
Journal:  Appl Environ Microbiol       Date:  2003-10       Impact factor: 4.792

9.  Archaeal ammonia oxidizers and nirS-type denitrifiers dominate sediment nitrifying and denitrifying populations in a subtropical macrotidal estuary.

Authors:  Guy C J Abell; Andrew T Revill; Craig Smith; Andrew P Bissett; John K Volkman; Stanley S Robert
Journal:  ISME J       Date:  2009-10-01       Impact factor: 10.302

10.  Development of PCR primer systems for amplification of nitrite reductase genes (nirK and nirS) to detect denitrifying bacteria in environmental samples.

Authors:  G Braker; A Fesefeldt; K P Witzel
Journal:  Appl Environ Microbiol       Date:  1998-10       Impact factor: 4.792

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  36 in total

1.  Seasonal changes in nitrogen-cycle gene abundances and in bacterial communities in acidic forest soils.

Authors:  Jaejoon Jung; Jinki Yeom; Jiwon Han; Jisun Kim; Woojun Park
Journal:  J Microbiol       Date:  2012-06-30       Impact factor: 3.422

2.  Rapid responses of soil microorganisms improve plant fitness in novel environments.

Authors:  Jennifer A Lau; Jay T Lennon
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-13       Impact factor: 11.205

3.  Communities of ammonia oxidizers at different stages of Spartina alterniflora invasion in salt marshes of Yangtze River estuary.

Authors:  Fei Xia; Jemaneh Zeleke; Qiang Sheng; Ji-Hua Wu; Zhe-Xue Quan
Journal:  J Microbiol       Date:  2015-05-03       Impact factor: 3.422

4.  Active autotrophic ammonia-oxidizing bacteria in biofilm enrichments from simulated creek ecosystems at two ammonium concentrations respond to temperature manipulation.

Authors:  Sharon Avrahami; Zhongjun Jia; Josh D Neufeld; J Colin Murrell; Ralf Conrad; Kirsten Küsel
Journal:  Appl Environ Microbiol       Date:  2011-09-02       Impact factor: 4.792

5.  Temporal changes in soil bacterial and archaeal communities with different fertilizers in tea orchards.

Authors:  Hua Wang; Shao-hui Yang; Jing-ping Yang; Ya-min Lv; Xing Zhao; Ji-liang Pang
Journal:  J Zhejiang Univ Sci B       Date:  2014-11       Impact factor: 3.066

6.  Submerged macrophytes shape the abundance and diversity of bacterial denitrifiers in bacterioplankton and epiphyton in the Shallow Fresh Lake Taihu, China.

Authors:  Zhou Fan; Rui-Ming Han; Jie Ma; Guo-Xiang Wang
Journal:  Environ Sci Pollut Res Int       Date:  2016-04-06       Impact factor: 4.223

7.  Variations of the nirS-, nirK-, and nosZ-denitrifying bacterial communities in a northern Chinese soil as affected by different long-term irrigation regimes.

Authors:  Ya-Dong Yang; Yue-Gao Hu; Zhi-Min Wang; Zhao-Hai Zeng
Journal:  Environ Sci Pollut Res Int       Date:  2018-03-08       Impact factor: 4.223

8.  Legacy effects of simulated short-term climate change on ammonia oxidisers, denitrifiers, and nitrous oxide emissions in an acid soil.

Authors:  Xiaoya Xu; Xiaorui Liu; Yong Li; Yu Ran; Yapeng Liu; Qichun Zhang; Zheng Li; Yan He; Jianming Xu; Hongjie Di
Journal:  Environ Sci Pollut Res Int       Date:  2017-03-21       Impact factor: 4.223

9.  Soil properties discriminating Araucaria forests with different disturbance levels.

Authors:  Simone Cristina Braga Bertini; Lucas Carvalho Basilio Azevedo; Mary E Stromberger; Elke Jurandy Bran Nogueira Cardoso
Journal:  Environ Monit Assess       Date:  2015-03-20       Impact factor: 2.513

10.  Coupled molecular and isotopic evidence for denitrifier controls over terrestrial nitrogen availability.

Authors:  Erin F E Lennon; Benjamin Z Houlton
Journal:  ISME J       Date:  2016-12-09       Impact factor: 10.302

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