Literature DB >> 20232912

Design of short linear peptides that show hydrogen bonding constraints in water.

Benben Song1, Patrick Kibler, Alpeshkumar Malde, Krishna Kodukula, Amit K Galande.   

Abstract

Using a combination of an aromatic amino acid, a homoserine side chain, and a d-amino acid, a series of linear tetrapeptides were designed that adopt an "Hse turn" in water. The conformation was stabilized by intramolecular hydrogen bonds even in the presence of surrounding water molecules. In particular, the peptide with sequence H-Abz-Homoser-Ser-d-Gln-NH(2) showed significant through-space interactions and its free energy of folding is estimated to be on the order of -4 kcal/mol. We report the design of the tetrapeptides using a novel mimicry approach and their characterization based on NMR spectroscopy and MD simulations.

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Year:  2010        PMID: 20232912     DOI: 10.1021/ja905341p

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  3 in total

1.  D-amino acids modulate the cellular response of enzymatic-instructed supramolecular nanofibers of small peptides.

Authors:  Junfeng Shi; Xuewen Du; Dan Yuan; Jie Zhou; Ning Zhou; Yibing Huang; Bing Xu
Journal:  Biomacromolecules       Date:  2014-09-17       Impact factor: 6.988

2.  ALS-Causing Mutations Significantly Perturb the Self-Assembly and Interaction with Nucleic Acid of the Intrinsically Disordered Prion-Like Domain of TDP-43.

Authors:  Liangzhong Lim; Yuanyuan Wei; Yimei Lu; Jianxing Song
Journal:  PLoS Biol       Date:  2016-01-06       Impact factor: 8.029

3.  Insight into the Self-Assembling Properties of Peptergents: A Molecular Dynamics Simulation Study.

Authors:  Jean Marc Crowet; Mehmet Nail Nasir; Nicolas Dony; Antoine Deschamps; Vincent Stroobant; Pierre Morsomme; Magali Deleu; Patrice Soumillion; Laurence Lins
Journal:  Int J Mol Sci       Date:  2018-09-14       Impact factor: 5.923

  3 in total

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