Literature DB >> 20232132

"Forward genetics" as a method to maximize power and cost-efficiency in studies of human complex traits.

M P M Boks1, E M Derks, C V Dolan, R S Kahn, R A Ophoff.   

Abstract

There is increasing interest in methods to disentangle the relationship between genotype and (endo)phenotypes in human complex traits. We present a population-based method of increasing the power and cost-efficiency of studies by selecting random individuals with a particular genotype and then assessing the accompanying quantitative phenotypes. Using statistical derivations, power- and cost graphs we show that such a "forward genetics" approach can lead to a marked reduction in sample size and costs. This approach is particularly apt for implementing in epidemiological studies for which DNA is already available but the phenotyping costs are high.

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Year:  2010        PMID: 20232132      PMCID: PMC2886904          DOI: 10.1007/s10519-010-9348-y

Source DB:  PubMed          Journal:  Behav Genet        ISSN: 0001-8244            Impact factor:   2.805


  8 in total

Review 1.  Genetic risk factors in Alzheimer's disease.

Authors:  L Tilley; K Morgan; N Kalsheker
Journal:  Mol Pathol       Date:  1998-12

2.  Genetic Power Calculator: design of linkage and association genetic mapping studies of complex traits.

Authors:  S Purcell; S S Cherny; P C Sham
Journal:  Bioinformatics       Date:  2003-01       Impact factor: 6.937

3.  The Utrecht Health Project: optimization of routine healthcare data for research.

Authors:  Diederick E Grobbee; Arno W Hoes; Theo J M Verheij; Augustinus J P Schrijvers; Erik J C van Ameijden; Mattijs E Numans
Journal:  Eur J Epidemiol       Date:  2005       Impact factor: 8.082

Review 4.  Defining the phenotype in human genetic studies: forward genetics and reverse phenotyping.

Authors:  Thomas G Schulze; Francis J McMahon
Journal:  Hum Hered       Date:  2004       Impact factor: 0.444

5.  Extreme discordant sib pairs for mapping quantitative trait loci in humans.

Authors:  N Risch; H Zhang
Journal:  Science       Date:  1995-06-16       Impact factor: 47.728

6.  Genome-wide linkage analysis of severe, early-onset chronic obstructive pulmonary disease: airflow obstruction and chronic bronchitis phenotypes.

Authors:  Edwin K Silverman; Jonathan D Mosley; Lyle J Palmer; Matthew Barth; Jody M Senter; Alison Brown; Jeffrey M Drazen; David J Kwiatkowski; Harold A Chapman; Edward J Campbell; Michael A Province; D C Rao; John J Reilly; Leo C Ginns; Frank E Speizer; Scott T Weiss
Journal:  Hum Mol Genet       Date:  2002-03-15       Impact factor: 6.150

7.  Common variants conferring risk of schizophrenia.

Authors:  Hreinn Stefansson; Roel A Ophoff; Stacy Steinberg; Ole A Andreassen; Sven Cichon; Dan Rujescu; Thomas Werge; Olli P H Pietiläinen; Ole Mors; Preben B Mortensen; Engilbert Sigurdsson; Omar Gustafsson; Mette Nyegaard; Annamari Tuulio-Henriksson; Andres Ingason; Thomas Hansen; Jaana Suvisaari; Jouko Lonnqvist; Tiina Paunio; Anders D Børglum; Annette Hartmann; Anders Fink-Jensen; Merete Nordentoft; David Hougaard; Bent Norgaard-Pedersen; Yvonne Böttcher; Jes Olesen; René Breuer; Hans-Jürgen Möller; Ina Giegling; Henrik B Rasmussen; Sally Timm; Manuel Mattheisen; István Bitter; János M Réthelyi; Brynja B Magnusdottir; Thordur Sigmundsson; Pall Olason; Gisli Masson; Jeffrey R Gulcher; Magnus Haraldsson; Ragnheidur Fossdal; Thorgeir E Thorgeirsson; Unnur Thorsteinsdottir; Mirella Ruggeri; Sarah Tosato; Barbara Franke; Eric Strengman; Lambertus A Kiemeney; Ingrid Melle; Srdjan Djurovic; Lilia Abramova; Vasily Kaleda; Julio Sanjuan; Rosa de Frutos; Elvira Bramon; Evangelos Vassos; Gillian Fraser; Ulrich Ettinger; Marco Picchioni; Nicholas Walker; Timi Toulopoulou; Anna C Need; Dongliang Ge; Joeng Lim Yoon; Kevin V Shianna; Nelson B Freimer; Rita M Cantor; Robin Murray; Augustine Kong; Vera Golimbet; Angel Carracedo; Celso Arango; Javier Costas; Erik G Jönsson; Lars Terenius; Ingrid Agartz; Hannes Petursson; Markus M Nöthen; Marcella Rietschel; Paul M Matthews; Pierandrea Muglia; Leena Peltonen; David St Clair; David B Goldstein; Kari Stefansson; David A Collier
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

8.  Pooled genome linkage scan of aggressive prostate cancer: results from the International Consortium for Prostate Cancer Genetics.

Authors:  Daniel J Schaid; Shannon K McDonnell; Katherine E Zarfas; Julie M Cunningham; Scott Hebbring; Stephen N Thibodeau; Rosalind A Eeles; Douglas F Easton; William D Foulkes; Jacques Simard; Graham G Giles; John L Hopper; Lovise Mahle; Pal Moller; Michael Badzioch; D Timothy Bishop; Chris Evans; Steve Edwards; Julia Meitz; Sarah Bullock; Questa Hope; Michelle Guy; Chih-lin Hsieh; Jerry Halpern; Raymond R Balise; Ingrid Oakley-Girvan; Alice S Whittemore; Jianfeng Xu; Latchezar Dimitrov; Bao-Li Chang; Tamara S Adams; Aubrey R Turner; Deborah A Meyers; Danielle M Friedrichsen; Kerry Deutsch; Suzanne Kolb; Marta Janer; Leroy Hood; Elaine A Ostrander; Janet L Stanford; Charles M Ewing; Marta Gielzak; Sarah D Isaacs; Patrick C Walsh; Kathleen E Wiley; William B Isaacs; Ethan M Lange; Lindsey A Ho; Jennifer L Beebe-Dimmer; David P Wood; Kathleen A Cooney; Daniela Seminara; Tarja Ikonen; Agnes Baffoe-Bonnie; Henna Fredriksson; Mika P Matikainen; Teuvo L J Tammela; Joan Bailey-Wilson; Johanna Schleutker; Christiane Maier; Kathleen Herkommer; Josef J Hoegel; Walther Vogel; Thomas Paiss; Fredrik Wiklund; Monica Emanuelsson; Elisabeth Stenman; Björn-Anders Jonsson; Henrik Grönberg; Nicola J Camp; James Farnham; Lisa A Cannon-Albright; William J Catalona; Brian K Suarez; Kimberly A Roehl
Journal:  Hum Genet       Date:  2006-08-25       Impact factor: 4.132

  8 in total

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