Literature DB >> 20225145

Mapping genomic targets of DNA helicases by chromatin immunoprecipitation in Saccharomyces cerevisiae.

Jennifer Cobb1, Haico van Attikum.   

Abstract

DNA helicases utilize the energy of nucleotide hydrolysis to unwind the two annealed strands of the DNA helix and are involved in many aspects of DNA metabolism such as replication, recombination, and repair. Chromatin immunoprecipitation (ChIP) has been instrumental in determining the genomic targets of many DNA helicases and DNA helicase-containing complexes including the minichromosome maintenance (Mcm) proteins 2-7, the RecQ helicase Sgs1 as well as the Rvb1 and Rvb2 helicase-containing INO80 and SWR1 chromatin remodeling complexes. Here we describe a ChIP method that has been successfully used to map these proteins at chromosomal double-strand breaks and replication forks in the model organism Saccharomyces cerevisiae.

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Year:  2010        PMID: 20225145     DOI: 10.1007/978-1-60327-355-8_8

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Multiple histone deacetylases are recruited by corepressor Sin3 and contribute to gene repression mediated by Opi1 regulator of phospholipid biosynthesis in the yeast Saccharomyces cerevisiae.

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2.  Forkhead transcription factor Fkh1: insights into functional regulatory domains crucial for recruitment of Sin3 histone deacetylase complex.

Authors:  Rasha Aref; Marwa N M E Sanad; Hans-Joachim Schüller
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3.  Cytoplasmic protein misfolding titrates Hsp70 to activate nuclear Hsf1.

Authors:  Anna E Masser; Wenjing Kang; Joydeep Roy; Jayasankar Mohanakrishnan Kaimal; Jany Quintana-Cordero; Marc R Friedländer; Claes Andréasson
Journal:  Elife       Date:  2019-09-25       Impact factor: 8.140

4.  Gcn5 and Esa1 function as histone crotonyltransferases to regulate crotonylation-dependent transcription.

Authors:  Leonie Kollenstart; Anton J L de Groot; George M C Janssen; Xue Cheng; Kees Vreeken; Fabrizio Martino; Jacques Côté; Peter A van Veelen; Haico van Attikum
Journal:  J Biol Chem       Date:  2019-11-07       Impact factor: 5.157

5.  Chl1 helicase controls replication fork progression by regulating dNTP pools.

Authors:  Amandine Batté; Sophie C van der Horst; Mireille Tittel-Elmer; Su Ming Sun; Sushma Sharma; Jolanda van Leeuwen; Andrei Chabes; Haico van Attikum
Journal:  Life Sci Alliance       Date:  2022-01-11

6.  Natural variants suppress mutations in hundreds of essential genes.

Authors:  Leopold Parts; Amandine Batté; Maykel Lopes; Michael W Yuen; Meredith Laver; Bryan-Joseph San Luis; Jia-Xing Yue; Carles Pons; Elise Eray; Patrick Aloy; Gianni Liti; Jolanda van Leeuwen
Journal:  Mol Syst Biol       Date:  2021-05       Impact factor: 13.068

7.  Epigenetics Identifier screens reveal regulators of chromatin acylation and limited specificity of acylation antibodies.

Authors:  Leonie Kollenstart; Sophie C van der Horst; Kees Vreeken; George M C Janssen; Fabrizio Martino; Hanneke Vlaming; Peter A van Veelen; Fred van Leeuwen; Haico van Attikum
Journal:  Sci Rep       Date:  2021-06-17       Impact factor: 4.379

8.  A genetic interaction map centered on cohesin reveals auxiliary factors involved in sister chromatid cohesion in S. cerevisiae.

Authors:  Su Ming Sun; Amandine Batté; Mireille Elmer; Sophie C van der Horst; Tibor van Welsem; Gordon Bean; Trey Ideker; Fred van Leeuwen; Haico van Attikum
Journal:  J Cell Sci       Date:  2020-05-22       Impact factor: 5.285

9.  Functional analysis of Cti6 core domain responsible for recruitment of epigenetic regulators Sin3, Cyc8 and Tup1.

Authors:  Rasha Aref; Hans-Joachim Schüller
Journal:  Curr Genet       Date:  2020-09-26       Impact factor: 3.886

  9 in total

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