Literature DB >> 20225140

Single-molecule FRET analysis of helicase functions.

Eli Rothenberg1, Taekjip Ha.   

Abstract

In recent years, advancements in single-biomolecule probing techniques have provided critical information on and greater insight into the nature of biomolecules. Of significance is the application of single-molecule fluorescence resonance energy transfer (smFRET) to probe isolated events and changes at the nanometer scales. In particular, the study of helicases using smFRET has supplied much information regarding the nature and dynamics of these enzymes and provided a toolbox for further investigations. In this chapter we provide a general guide for the construction and execution of single-molecule FRET assays for the study of helicase properties and functionalities.

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Year:  2010        PMID: 20225140     DOI: 10.1007/978-1-60327-355-8_3

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  13 in total

1.  FBH1 helicase disrupts RAD51 filaments in vitro and modulates homologous recombination in mammalian cells.

Authors:  Jitka Simandlova; Jennifer Zagelbaum; Miranda J Payne; Wai Kit Chu; Igor Shevelev; Katsuhiro Hanada; Sujoy Chatterjee; Dylan A Reid; Ying Liu; Pavel Janscak; Eli Rothenberg; Ian D Hickson
Journal:  J Biol Chem       Date:  2013-10-09       Impact factor: 5.157

2.  Organization and dynamics of the nonhomologous end-joining machinery during DNA double-strand break repair.

Authors:  Dylan A Reid; Sarah Keegan; Alejandra Leo-Macias; Go Watanabe; Natasha T Strande; Howard H Chang; Betul Akgol Oksuz; David Fenyo; Michael R Lieber; Dale A Ramsden; Eli Rothenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2015-05-04       Impact factor: 11.205

3.  Extracting Transition Rates in Particle Tracking Using Analytical Diffusion Distribution Analysis.

Authors:  Jochem N A Vink; Stan J J Brouns; Johannes Hohlbein
Journal:  Biophys J       Date:  2020-10-04       Impact factor: 4.033

4.  Real-time analysis of RAG complex activity in V(D)J recombination.

Authors:  Jennifer Zagelbaum; Noriko Shimazaki; Zitadel Anne Esguerra; Go Watanabe; Michael R Lieber; Eli Rothenberg
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-04       Impact factor: 11.205

5.  Unwinding initiation by the viral RNA helicase NPH-II.

Authors:  Margaret E Fairman-Williams; Eckhard Jankowsky
Journal:  J Mol Biol       Date:  2011-12-06       Impact factor: 5.469

6.  Classic maximum entropy recovery of the average joint distribution of apparent FRET efficiency and fluorescence photons for single-molecule burst measurements.

Authors:  Matthew S DeVore; Stephen F Gull; Carey K Johnson
Journal:  J Phys Chem B       Date:  2012-03-22       Impact factor: 2.991

7.  Single-molecule pull-down for studying protein interactions.

Authors:  Ankur Jain; Ruijie Liu; Yang K Xiang; Taekjip Ha
Journal:  Nat Protoc       Date:  2012-02-09       Impact factor: 13.491

8.  Single molecule measurements of DNA helicase activity with magnetic tweezers and t-test based step-finding analysis.

Authors:  Yeonee Seol; Marie-Paule Strub; Keir C Neuman
Journal:  Methods       Date:  2016-04-27       Impact factor: 3.608

9.  Inhibitors of SCF-Skp2/Cks1 E3 ligase block estrogen-induced growth stimulation and degradation of nuclear p27kip1: therapeutic potential for endometrial cancer.

Authors:  Savvas C Pavlides; Kuang-Tzu Huang; Dylan A Reid; Lily Wu; Stephanie V Blank; Khushbakhat Mittal; Lankai Guo; Eli Rothenberg; Bo Rueda; Timothy Cardozo; Leslie I Gold
Journal:  Endocrinology       Date:  2013-09-13       Impact factor: 4.736

10.  Mechanistic insight into the interaction of BLM helicase with intra-strand G-quadruplex structures.

Authors:  Sujoy Chatterjee; Jennifer Zagelbaum; Pavel Savitsky; Andreas Sturzenegger; Diana Huttner; Pavel Janscak; Ian D Hickson; Opher Gileadi; Eli Rothenberg
Journal:  Nat Commun       Date:  2014-11-24       Impact factor: 14.919

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