Literature DB >> 20221927

Conformational disorder.

Sonia Longhi1, Philippe Lieutaud, Bruno Canard.   

Abstract

In recent years it was shown that a large number of proteins are either fully or partially disordered. Intrinsically disordered proteins are ubiquitary proteins that fulfill essential biological functions while lacking a stable 3D structure. Despite the large abundance of disorder, disordered regions are still poorly detected. The identification of disordered regions facilitates the functional annotation of proteins and is instrumental in delineating boundaries of protein domains amenable to crystallization. This chapter focuses on the methods currently employed for predicting disorder and identifying regions involved in induced folding.

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Year:  2010        PMID: 20221927     DOI: 10.1007/978-1-60327-241-4_18

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  10 in total

1.  How disordered is my protein and what is its disorder for? A guide through the "dark side" of the protein universe.

Authors:  Philippe Lieutaud; François Ferron; Alexey V Uversky; Lukasz Kurgan; Vladimir N Uversky; Sonia Longhi
Journal:  Intrinsically Disord Proteins       Date:  2016-12-21

2.  Interfacial Properties of NTAIL, an Intrinsically Disordered Protein.

Authors:  Anaïs Bénarouche; Johnny Habchi; Alain Cagna; Ofelia Maniti; Agnès Girard-Egrot; Jean-François Cavalier; Sonia Longhi; Frédéric Carrière
Journal:  Biophys J       Date:  2017-12-19       Impact factor: 4.033

3.  Predicting Protein Conformational Disorder and Disordered Binding Sites.

Authors:  Ketty C Tamburrini; Giulia Pesce; Juliet Nilsson; Frank Gondelaud; Andrey V Kajava; Jean-Guy Berrin; Sonia Longhi
Journal:  Methods Mol Biol       Date:  2022

4.  LptA assembles into rod-like oligomers involving disorder-to-order transitions.

Authors:  Carlo Santambrogio; Paola Sperandeo; Riccardo Villa; Frank Sobott; Alessandra Polissi; Rita Grandori
Journal:  J Am Soc Mass Spectrom       Date:  2013-07-30       Impact factor: 3.109

5.  Bioinformatics analysis of disordered proteins in prokaryotes.

Authors:  Gordana M Pavlović-Lažetić; Nenad S Mitić; Jovana J Kovačević; Zoran Obradović; Saša N Malkov; Miloš V Beljanski
Journal:  BMC Bioinformatics       Date:  2011-03-02       Impact factor: 3.169

6.  Brain expressed and X-linked (Bex) proteins are intrinsically disordered proteins (IDPs) and form new signaling hubs.

Authors:  Eva M Fernandez; María D Díaz-Ceso; Marçal Vilar
Journal:  PLoS One       Date:  2015-01-22       Impact factor: 3.240

7.  Structural disorder and induced folding within two cereal, ABA stress and ripening (ASR) proteins.

Authors:  Karama Hamdi; Edoardo Salladini; Darragh P O'Brien; Sébastien Brier; Alexandre Chenal; Ines Yacoubi; Sonia Longhi
Journal:  Sci Rep       Date:  2017-11-14       Impact factor: 4.379

8.  Grape ASR-Silencing Sways Nuclear Proteome, Histone Marks and Interplay of Intrinsically Disordered Proteins.

Authors:  Hristo Atanassov; Jonathan Parrilla; Caroline Artault; Jérémy Verbeke; Thomas Schneider; Jonas Grossmann; Bernd Roschitzki; Rossitza Atanassova
Journal:  Int J Mol Sci       Date:  2022-01-28       Impact factor: 5.923

9.  Phosphoproteomic analysis reveals major default phosphorylation sites outside long intrinsically disordered regions of Arabidopsis plasma membrane proteins.

Authors:  Claude Nespoulous; Valérie Rofidal; Nicolas Sommerer; Sonia Hem; Michel Rossignol
Journal:  Proteome Sci       Date:  2012-10-30       Impact factor: 2.480

Review 10.  Protein stability: a crystallographer's perspective.

Authors:  Marc C Deller; Leopold Kong; Bernhard Rupp
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2016-01-26       Impact factor: 1.056

  10 in total

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