Literature DB >> 20220749

Prediction of adverse drug reactions using decision tree modeling.

F Hammann1, H Gutmann, N Vogt, C Helma, J Drewe.   

Abstract

Drug safety is of great importance to public health. The detrimental effects of drugs not only limit their application but also cause suffering in individual patients and evoke distrust of pharmacotherapy. For the purpose of identifying drugs that could be suspected of causing adverse reactions, we present a structure-activity relationship analysis of adverse drug reactions (ADRs) in the central nervous system (CNS), liver, and kidney, and also of allergic reactions, for a broad variety of drugs (n = 507) from the Swiss drug registry. Using decision tree induction, a machine learning method, we determined the chemical, physical, and structural properties of compounds that predispose them to causing ADRs. The models had high predictive accuracies (78.9-90.2%) for allergic, renal, CNS, and hepatic ADRs. We show the feasibility of predicting complex end-organ effects using simple models that involve no expensive computations and that can be used (i) in the selection of the compound during the drug discovery stage, (ii) to understand how drugs interact with the target organ systems, and (iii) for generating alerts in postmarketing drug surveillance and pharmacovigilance.

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Year:  2010        PMID: 20220749     DOI: 10.1038/clpt.2009.248

Source DB:  PubMed          Journal:  Clin Pharmacol Ther        ISSN: 0009-9236            Impact factor:   6.875


  18 in total

1.  Predicting adverse drug reactions using publicly available PubChem BioAssay data.

Authors:  Y Pouliot; A P Chiang; A J Butte
Journal:  Clin Pharmacol Ther       Date:  2011-05-25       Impact factor: 6.875

2.  Determining molecular predictors of adverse drug reactions with causality analysis based on structure learning.

Authors:  Mei Liu; Ruichu Cai; Yong Hu; Michael E Matheny; Jingchun Sun; Jun Hu; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2013-12-11       Impact factor: 4.497

3.  Combining automatic table classification and relationship extraction in extracting anticancer drug-side effect pairs from full-text articles.

Authors:  Rong Xu; QuanQiu Wang
Journal:  J Biomed Inform       Date:  2014-10-13       Impact factor: 6.317

4.  In silico approaches in organ toxicity hazard assessment: Current status and future needs for predicting heart, kidney and lung toxicities.

Authors:  Arianna Bassan; Vinicius M Alves; Alexander Amberg; Lennart T Anger; Lisa Beilke; Andreas Bender; Autumn Bernal; Mark T D Cronin; Jui-Hua Hsieh; Candice Johnson; Raymond Kemper; Moiz Mumtaz; Louise Neilson; Manuela Pavan; Amy Pointon; Julia Pletz; Patricia Ruiz; Daniel P Russo; Yogesh Sabnis; Reena Sandhu; Markus Schaefer; Lidiya Stavitskaya; David T Szabo; Jean-Pierre Valentin; David Woolley; Craig Zwickl; Glenn J Myatt
Journal:  Comput Toxicol       Date:  2021-09-13

5.  Predicting Adverse Drug Reactions on Distributed Health Data using Federated Learning.

Authors:  Olivia Choudhury; Yoonyoung Park; Theodoros Salonidis; Aris Gkoulalas-Divanis; Issa Sylla; Amar K Das
Journal:  AMIA Annu Symp Proc       Date:  2020-03-04

6.  Large-scale prediction of adverse drug reactions using chemical, biological, and phenotypic properties of drugs.

Authors:  Mei Liu; Yonghui Wu; Yukun Chen; Jingchun Sun; Zhongming Zhao; Xue-wen Chen; Michael Edwin Matheny; Hua Xu
Journal:  J Am Med Inform Assoc       Date:  2012-06       Impact factor: 4.497

7.  Predicting adverse side effects of drugs.

Authors:  Liang-Chin Huang; Xiaogang Wu; Jake Y Chen
Journal:  BMC Genomics       Date:  2011-12-23       Impact factor: 3.969

8.  BICEPP: an example-based statistical text mining method for predicting the binary characteristics of drugs.

Authors:  Frank P Y Lin; Stephen Anthony; Thomas M Polasek; Guy Tsafnat; Matthew P Doogue
Journal:  BMC Bioinformatics       Date:  2011-04-21       Impact factor: 3.169

9.  Sieve-based coreference resolution enhances semi-supervised learning model for chemical-induced disease relation extraction.

Authors:  Hoang-Quynh Le; Mai-Vu Tran; Thanh Hai Dang; Quang-Thuy Ha; Nigel Collier
Journal:  Database (Oxford)       Date:  2016-07       Impact factor: 3.451

10.  Integrating Multiple Evidence Sources to Predict Adverse Drug Reactions Based on a Systems Pharmacology Model.

Authors:  D-S Cao; N Xiao; Y-J Li; W-B Zeng; Y-Z Liang; A-P Lu; Q-S Xu; A F Chen
Journal:  CPT Pharmacometrics Syst Pharmacol       Date:  2015-09-11
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