Literature DB >> 20220309

Diverse functions for DNA and RNA editing in the immune system.

Claire E Hamilton1, F Nina Papavasiliou, Brad R Rosenberg.   

Abstract

Polynucleotide DNA and RNA editing enzymes alter nucleic acid sequences and can thereby modify encoded informational content. Two major families of polynucleotide editing enzymes, the AID/APOBEC cytidine deaminases (which catalyze the deamination of cytidine to uridine) and the adenosine deaminases acting on RNA (ADARs, which catalyze the deamination of adenosine to inosine), function in a variety of host defense mechanisms. These enzymes act in innate and adaptive immune pathways, with both host and pathogen targets. DNA editing by the cytidine deaminase AID mediates immunoglobulin somatic hypermutation and class switch recombination, providing the antibody response with the flexibility and diversity to defend against an almost limitless array of varied and rapidly adapting pathogenic challenges. Other cytidine deaminases (APOBEC3) restrict retroviral infection by editing viral retrogenomes. Adenosine deaminases (ADARs) shape innate immune responses by modifying host transcripts that encode immune effectors and their regulators. Here we review current knowledge of polynucleotide DNA and RNA editors with a focus on these and other functions they serve in the immune system.

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Year:  2010        PMID: 20220309     DOI: 10.4161/rna.7.2.11344

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  26 in total

1.  APOBEC3 proteins and genomic stability: the high cost of a good defense.

Authors:  Iñigo Narvaiza; Sébastien Landry; Matthew D Weitzman
Journal:  Cell Cycle       Date:  2012-01-01       Impact factor: 4.534

2.  Key genomic changes necessary for an in vivo lethal mouse marburgvirus variant selection process.

Authors:  Loreen L Lofts; Jay B Wells; Sina Bavari; Kelly L Warfield
Journal:  J Virol       Date:  2011-02-02       Impact factor: 5.103

3.  RNA editing alterations in a multi-ethnic Alzheimer disease cohort converge on immune and endocytic molecular pathways.

Authors:  Olivia K Gardner; Lily Wang; Derek Van Booven; Patrice L Whitehead; Kara L Hamilton-Nelson; Larry D Adams; Takiyah D Starks; Natalia K Hofmann; Jeffery M Vance; Michael L Cuccaro; Eden R Martin; Goldie S Byrd; Jonathan L Haines; William S Bush; Gary W Beecham; Margaret A Pericak-Vance; Anthony J Griswold
Journal:  Hum Mol Genet       Date:  2019-09-15       Impact factor: 6.150

Review 4.  Design principles of adaptive immune systems.

Authors:  Thomas Boehm
Journal:  Nat Rev Immunol       Date:  2011-04-08       Impact factor: 53.106

5.  RNA editing of hepatitis B virus transcripts by activation-induced cytidine deaminase.

Authors:  Guoxin Liang; Kouichi Kitamura; Zhe Wang; Guangyan Liu; Sajeda Chowdhury; Weixin Fu; Miki Koura; Kousho Wakae; Tasuku Honjo; Masamichi Muramatsu
Journal:  Proc Natl Acad Sci U S A       Date:  2013-01-22       Impact factor: 11.205

6.  Crystal structure of the DNA cytosine deaminase APOBEC3F: the catalytically active and HIV-1 Vif-binding domain.

Authors:  Markus-Frederik Bohn; Shivender M D Shandilya; John S Albin; Takahide Kouno; Brett D Anderson; Rebecca M McDougle; Michael A Carpenter; Anurag Rathore; Leah Evans; Ahkillah N Davis; Jingying Zhang; Yongjian Lu; Mohan Somasundaran; Hiroshi Matsuo; Reuben S Harris; Celia A Schiffer
Journal:  Structure       Date:  2013-05-16       Impact factor: 5.006

7.  Incorporating alternative splicing and mRNA editing into the genetic analysis of complex traits.

Authors:  Musa A Hassan; Jeroen P J Saeij
Journal:  Bioessays       Date:  2014-08-29       Impact factor: 4.345

8.  RNA editing of protein sequences: a rare event in human transcriptomes.

Authors:  Claudia L Kleinman; Véronique Adoue; Jacek Majewski
Journal:  RNA       Date:  2012-07-25       Impact factor: 4.942

Review 9.  Methods and Applications of CRISPR-Mediated Base Editing in Eukaryotic Genomes.

Authors:  Gaelen T Hess; Josh Tycko; David Yao; Michael C Bassik
Journal:  Mol Cell       Date:  2017-10-05       Impact factor: 17.970

Review 10.  The multifaceted roles of RNA binding in APOBEC cytidine deaminase functions.

Authors:  Kimberly M Prohaska; Ryan P Bennett; Jason D Salter; Harold C Smith
Journal:  Wiley Interdiscip Rev RNA       Date:  2014-03-24       Impact factor: 9.957

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