Literature DB >> 20215015

Rapid quantification of DNA libraries for next-generation sequencing.

Bernd Buehler1, Holly H Hogrefe, Graham Scott, Harini Ravi, Carlos Pabón-Peña, Scott O'Brien, Rachel Formosa, Scott Happe.   

Abstract

The next-generation DNA sequencing workflows require an accurate quantification of the DNA molecules to be sequenced which assures optimal performance of the instrument. Here, we demonstrate the use of qPCR for quantification of DNA libraries used in next-generation sequencing. In addition, we find that qPCR quantification may allow improvements to current NGS workflows, including reducing the amount of library DNA required, increasing the accuracy in quantifying amplifiable DNA, and avoiding amplification bias by reducing or eliminating the need to amplify DNA before sequencing. Copyright 2010. Published by Elsevier Inc.

Mesh:

Year:  2010        PMID: 20215015     DOI: 10.1016/j.ymeth.2010.01.004

Source DB:  PubMed          Journal:  Methods        ISSN: 1046-2023            Impact factor:   3.608


  6 in total

1.  Simultaneous digital quantification and fluorescence-based size characterization of massively parallel sequencing libraries.

Authors:  Matthew T Laurie; Jessica A Bertout; Sean D Taylor; Joshua N Burton; Jay A Shendure; Jason H Bielas
Journal:  Biotechniques       Date:  2013-08       Impact factor: 1.993

2.  Identification of sequence variants in genetic disease-causing genes using targeted next-generation sequencing.

Authors:  Xiaoming Wei; Xiangchun Ju; Xin Yi; Qian Zhu; Ning Qu; Tengfei Liu; Yang Chen; Hui Jiang; Guanghui Yang; Ruan Zhen; Zhangzhang Lan; Ming Qi; Jinming Wang; Yi Yang; Yuxing Chu; Xiaoyan Li; Yanfang Guang; Jian Huang
Journal:  PLoS One       Date:  2011-12-21       Impact factor: 3.240

3.  Direct squencing from the minimal number of DNA molecules needed to fill a 454 picotiterplate.

Authors:  Mária Džunková; Marc Garcia-Garcerà; Llúcia Martínez-Priego; Giussepe D'Auria; Francesc Calafell; Andrés Moya
Journal:  PLoS One       Date:  2014-06-02       Impact factor: 3.240

4.  Use of the melting curve assay as a means for high-throughput quantification of Illumina sequencing libraries.

Authors:  Hiroshi Shinozuka; John W Forster
Journal:  PeerJ       Date:  2016-08-04       Impact factor: 2.984

5.  Quantification of massively parallel sequencing libraries - a comparative study of eight methods.

Authors:  Christian Hussing; Marie-Louise Kampmann; Helle Smidt Mogensen; Claus Børsting; Niels Morling
Journal:  Sci Rep       Date:  2018-01-18       Impact factor: 4.379

6.  Toward reliable biomarker signatures in the age of liquid biopsies - how to standardize the small RNA-Seq workflow.

Authors:  Dominik Buschmann; Anna Haberberger; Benedikt Kirchner; Melanie Spornraft; Irmgard Riedmaier; Gustav Schelling; Michael W Pfaffl
Journal:  Nucleic Acids Res       Date:  2016-06-17       Impact factor: 16.971

  6 in total

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