| Literature DB >> 20214085 |
Anchalee Tungtrongchitr1, Nitat Sookrung, Nitaya Indrawattana, Sukanya Kwangsi, Jeerawan Ongrotchanakun, Wanpen Chaicumpa.
Abstract
This study was undertaken to determine the genetic diversities of Giardia intestinalis isolated in Thailand. G. intestinalis cysts were collected from stool samples of 61 subjects residing in Bangkok or in rural communities of Thailand with and without gastrointestinal symptoms. All the cyst samples gave positive tpi amplicons (100% sensitivity), either of the 148- or the 81-bp tpi segments. Cyst assemblage identification of the 148- and 81-bp tpi gene segments by polymerase chain reaction showed that 8% of the cysts were assemblage A, 41% assemblage A and B combined, and 51% assemblage B. The prevalence of assemblage A was significantly lower than that of assemblage B and the mixed types. Restriction fragment length polymorphism (RFLP) of the 384-bp beta-giardin gene segment revealed that 12% and 88% of the assemblage A cysts were AI and AII respectively. RFLP, based on the 432-bp gdh gene segment, showed 45.5% of the assemblage B cysts to be BIII and 54.5% to be BIV. The AI sub-assemblage was less prevalent than the others. All subjects with AI and 50% of the subjects with BIII sub-assemblage cysts were symptomatic; 80% of symptomatic Bangkok residents were adults/elderly while 85% of the rural cases were children.Entities:
Mesh:
Year: 2010 PMID: 20214085 PMCID: PMC2975845 DOI: 10.3329/jhpn.v28i1.4522
Source DB: PubMed Journal: J Health Popul Nutr ISSN: 1606-0997 Impact factor: 2.000
Background information on the subjects from whom G. intestinalis cysts were collected, the results of gene segment amplifications, and the assemblage/sub-assemblage classification of the cysts
| Source | Group | No. | Age (years) | Sex | PCR amplicon | Assemblage(s) | Sub-assemblage(s) | |||
|---|---|---|---|---|---|---|---|---|---|---|
| β- | β- | |||||||||
| Siriraj | 1 (healthy) | 1 | 7 | F | - | + | + | + | A+B | AII+BIII |
| Hospital | 2 | 14 | M | + | + | + | - | A+B | AII | |
| 3 | 34 | M | - | + | + | + | B | BIV | ||
| 4 | 57 | M | + | + | + | + | B | BIV | ||
| 5 | 15 | F | - | + | + | + | A+B | AII+BIII | ||
| 6 | 2 | M | - | + | + | - | B | |||
| 7 | 47 | F | - | + | - | - | B | |||
| 8 | 33 | F | - | - | - | - | B | |||
| 9 | 18 | F | - | + | - | - | B | |||
| 10 | 37 | M | - | + | + | - | A+B | AII | ||
| 11 | 44 | M | + | + | + | - | A+B | AII | ||
| 12 | 32 | F | - | - | - | - | B | |||
| 13 | 9 | M | + | + | + | - | A+B | AII | ||
| 14 | 55 | M | - | + | - | - | B | |||
| 15 | 35 | M | - | + | - | - | B | |||
| 16 | 58 | F | - | - | - | - | B | |||
| 17 | 70 | M | + | + | + | + | A+B | AII+BIV | ||
| 2 (symptomatic) | 18 | 38 | F | - | + | + | + | A+B | AII+BIII | |
| 19 | 50 | M | - | + | + | + | A+B | AII+BIV | ||
| 20 | 9 | M | + | - | - | - | B | |||
| 21 | 54 | M | + | + | - | - | B | |||
| 22 | 66 | F | + | + | + | + | A+B | AI+BIV | ||
| Ratchaburi | 3 (healthy) | 23 | 4 | M | + | + | + | - | B | |
| province | 24 | 7 | F | - | + | + | - | A | AII | |
| 25 | 29 | M | - | - | - | - | B | |||
| 26 | 2 | F | - | + | + | - | B | |||
| 27 | 3 | F | - | - | - | - | B | |||
| 28 | 4 | F | - | - | - | - | B | |||
| 29 | 6 | F | + | + | + | - | B | |||
| 30 | 9 | M | - | + | - | + | A+B | AII+BIV | ||
| 31 | 11 | F | - | + | + | - | A+B | AII | ||
| 32 | 3 | M | - | - | - | + | B | BIV | ||
| 33 | 9 | M | - | + | - | - | A | AII | ||
| 34 | 12 | M | - | + | + | - | B | |||
| 35 | 10 | F | - | + | + | - | B | |||
| 36 | 31 | M | - | + | + | + | B | BIV | ||
| 37 | 43 | F | - | + | + | - | A+B | AII | ||
| 38 | 42 | M | - | - | - | + | B | BIV | ||
| 39 | 69 | F | - | - | - | - | A+B | |||
| 40 | 6 | F | - | + | - | - | B | |||
| 41 | 5 | F | + | + | + | + | A+B | AII+BIII | ||
| 42 | 13 | M | - | - | - | + | A+B | BIV | ||
| 43 | 10 | M | - | + | + | - | A | AII | ||
| 44 | 4 | F | - | + | - | - | A | AII | ||
| 45 | 7 | M | - | + | + | - | A+B | AII | ||
| 46 | 13 | F | + | + | - | - | B | |||
| 47 | 14 | M | - | - | - | - | A+B | |||
| 48 | 3 | F | - | - | - | - | B | |||
| 4 (symptomatic) | 49 | 5 | M | - | - | - | - | B | ||
| 50 | 3 | F | + | + | + | + | A+B | AII+BIII | ||
| 51 | 7 | F | - | - | - | - | A+B | |||
| 52 | 8 | F | - | - | - | + | A+B | BIII | ||
| 53 | 2 | F | - | - | - | + | B | BIV | ||
| 54 | 4 | M | - | + | - | + | B | BIII | ||
| 55 | 7 | M | - | + | + | + | A+B | AII+BIII | ||
| 56 | 6 | M | - | + | - | + | A+B | AI+BIII | ||
| 57 | 6 | M | + | + | - | - | B | |||
| 58 | 50 | F | - | + | - | - | A | AII | ||
| 59 | 4 | F | - | + | - | + | A+B | AII+BIII | ||
| 60 | 5 | F | - | + | - | + | A+B | AI+BIV | ||
| 61 | 5 | F | - | + | + | - | B | |||
| Number of detected/total samples | 14/61 | 44/61 | 28/61 | 22/61 | ||||||
*Assemblage classification was based on the results of tpi amplification (assemblage A was positive for the 148-bp tpi amplicon, and assemblage B was positive for the 81-bp tpi amplicon);
**Sub-assemblages were based on the RFLP of the 384 β-giardin and gdh amplicons (see text);
PCR=Polymerase chain reaction;
RFLP=Restriction fragment length polymorphism
Oligonucleotide primers used in this study
| Gene | Primer | Sequence | Amplicon size (bp) | Reference |
|---|---|---|---|---|
| F-H11 | 5-CATCCGGTCGATCCTGCC-3 | 292 | ||
| R-RH4 | 5-AGTCGAACCCTGATTCTCCGCCCAGG-3 | |||
| 384-bp β- | F-376 | 5-CATAACGACGCCATCGCGGCTCTCAGGAA-3 | 384 | |
| R-G759 | 5-GAGGCCGCCCTGGATCTTCGAGACGAC-3 | |||
| 753-bp β- | F-G7 | 5-AAGCCCGACGACCTCACCCGCAGTGC-3 | 753 | |
| R-G759 | 5-GAGGCCGCCCTGGATCTTCGAGACGAC-3 | |||
| F-gdhe | 5-TCAACGTYAAYCGYGGYTTCCGT-3 | |||
| R-gdhi | 5-GTTRTCCTTGCACATCTCC-3 | |||
| F-gdhi | 5-CAGTACAACTCYGCTCTCGG-3 | 432 | ||
| R-gdhe | 5-GTTRTCCTTGCACATCTCC-3 | |||
| F-tpiA | 5-GGAGACCGACGAGCAAAGC-3 | 148 | ||
| R-tpiA | 5-CTTGCCAAGCGCCTCAA-3 | |||
| F-tpiB | 5-AATAGCAGCACARAACGTGTATCTG-3’ | 81 | ||
| R-tpiB | 5-CCCATGTCCAGCAGCATCT-3 |
PCR=Polymerase chain reaction
Fig. 1.PCR amplicons of β-giardin, ssrRNA, gdh, and tpi segments
Prevalence of Giardia intestinalis cyst assemblage(s)
| Symptomatic (n=18) | Asymptomatic (n=43) | |||
|---|---|---|---|---|
| No. % | No. % | |||
| A | 1 | 5.6 | 4 | 9.3 |
| B | 7 | 38.8 | 24 | 55.8 |
| Mixed types | 10 | 55.6 | 15 | 34.9 |
Entries with different superscripts (*,**) are statistically different at p<0.05
Fig. 2.DNA-banding patterns (RFLP) of the 384-bp β-giardin gene amplicons cut by the HhaI restriction endonuclease
Fig. 3.DNA-banding patterns (RFLP) of the 432-bp gdh amplicons cut by the Rsal restriction endonuclease
Distribution of Giardia intestinalis assemblage(s) and sub-assemblage(s) among symptomatic and asymptomatic Thai subjects
| Symptomatic (n=18) | Asymptomatic (n=43) | ||||
|---|---|---|---|---|---|
| Assemblage(s) | Sub-assemblage(s) | No. | % | No. | % |
| A | A (unidentified) | 0 | 0 | ||
| AI | 0 | 0 | |||
| AII | 1 | 5.6 | 4 | 9.3 | |
| B | B (unidentified) | 5 | 27.6 | 19 | 44.2 |
| BIII | 1 | 5.6 | 0 | ||
| BIV | 1 | 5.6 | 5 | 11.6 | |
| Mixed types | A+B | 1 | 5.6 | 2 | 4.7 |
| (A+B) | A+BIII | 1 | 5.6 | 0 | |
| A+BIV | 0 | 1 | 2.3 | ||
| AI+BIII | 1 | 5.6 | 0 | ||
| AI+BIV | 2 | 11.1 | 0 | ||
| AII+B | 0 | 7 | 16.3 | ||
| AII+BIII | 4 | 22.1 | 3 | 6.9 | |
| AII+BIV | 1 | 5.6 | 2 | 4.7 | |
Age of subjects with gastrointestinal disturbances whose stool samples contained Giardia intestinalis only or with other parasite(s)
| Group | No. of subjects | Age (years) | Clinical diagnosis/other parasite(s) found | Assemblage(s)/sub-assemblage(s) |
|---|---|---|---|---|
| 2 | 18 | 38 | Abdominal pain, diarrhoea with soft stool | AII+BIII |
| (Siriraj Hospital, Bangkok) | 19 | 50 | Abdominal pain with nausea, anaemia | AII+BIV |
| 20 | 9 | Diarrhoea, bronchitis | B | |
| 21 | 54 | Diarrhoea, chronic urticaria | B | |
| 22 | 66 | Diarrhoea with watery stool, hypertesion, dyslipidaemia | AI+BIV | |
| 4 | 49 | 5 | Diarrhoea | B |
| (Community, Ratchaburi province) | 50 | 3 | Abdominal pain, diarrhoea with soft stool | AII+BIII |
| 51 | 7 | Diarrhoea | A+B | |
| 52 | 8 | Abdominal pain, diarrhoea | A+BIII | |
| 53 | 2 | Abdominal pain with nausea | BIV | |
| 54 | 4 | Abdominal pain, diarrhoea | BIII | |
| 55 | 7 | Abdominal pain, diarrhoea with soft stool | AII+BIII | |
| 56 | 6 | Watery diarrhoea | AI+BIII | |
| 57 | 6 | Diarrhoea | B | |
| 58 | 50 | Watery diarrhoea | AII | |
| 59 | 4 | Abdominal pain, diarrhoea with soft stool | AII+BIII | |
| 60 | 5 | Diarrhoea with watery stool | AI+BIV | |
| 61 | 5 | Diarrhoea | B |