Literature DB >> 20211618

Recent advances in DNA sequencing methods - general principles of sample preparation.

Sten Linnarsson1.   

Abstract

DNA sequencing has revolutionized biomedicine, and progress in the field has been unrelenting since it was invented over 30years ago. The complete DNA sequence of the human genome was obtained as the culmination of a decade of work by a large number of scientists. Less than ten years later, so-called 'next-generation' instruments now make it possible for a single lab to produce the same amount of data in a week. But while the instruments are increasingly automated, upstream sample processing remains a challenge. Here I review the current state of the art in preparing genomic and RNA samples for high throughput sequencing. Copyright 2010 Elsevier Inc. All rights reserved.

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Year:  2010        PMID: 20211618     DOI: 10.1016/j.yexcr.2010.02.036

Source DB:  PubMed          Journal:  Exp Cell Res        ISSN: 0014-4827            Impact factor:   3.905


  25 in total

1.  Counting absolute numbers of molecules using unique molecular identifiers.

Authors:  Teemu Kivioja; Anna Vähärautio; Kasper Karlsson; Martin Bonke; Martin Enge; Sten Linnarsson; Jussi Taipale
Journal:  Nat Methods       Date:  2011-11-20       Impact factor: 28.547

2.  Simultaneous digital quantification and fluorescence-based size characterization of massively parallel sequencing libraries.

Authors:  Matthew T Laurie; Jessica A Bertout; Sean D Taylor; Joshua N Burton; Jay A Shendure; Jason H Bielas
Journal:  Biotechniques       Date:  2013-08       Impact factor: 1.993

Review 3.  Dual RNA-seq of pathogen and host.

Authors:  Alexander J Westermann; Stanislaw A Gorski; Jörg Vogel
Journal:  Nat Rev Microbiol       Date:  2012-09       Impact factor: 60.633

4.  Linear amplification for deep sequencing.

Authors:  Wieteke A M Hoeijmakers; Richárd Bártfai; Kees-Jan Françoijs; Hendrik G Stunnenberg
Journal:  Nat Protoc       Date:  2011-06-23       Impact factor: 13.491

Review 5.  Plant exomics: concepts, applications and methodologies in crop improvement.

Authors:  Uzair Hashmi; Samia Shafqat; Faria Khan; Misbah Majid; Harris Hussain; Alvina Gul Kazi; Riffat John; Parvaiz Ahmad
Journal:  Plant Signal Behav       Date:  2015

Review 6.  Challenges of metagenomics and single-cell genomics approaches for exploring cyanobacterial diversity.

Authors:  Michelle Davison; Eric Hall; Richard Zare; Devaki Bhaya
Journal:  Photosynth Res       Date:  2014-12-17       Impact factor: 3.573

Review 7.  Emerging Role of Genomics and Cell-Free DNA in Breast Cancer.

Authors:  Lorenzo Gerratana; Andrew A Davis; Ami N Shah; Chenyu Lin; Carla Corvaja; Massimo Cristofanilli
Journal:  Curr Treat Options Oncol       Date:  2019-06-29

8.  Pinpointing the Genomic Localizations of Chromatin-Associated Proteins: The Yesterday, Today, and Tomorrow of ChIP-seq.

Authors:  Sarah M Lloyd; Xiaomin Bao
Journal:  Curr Protoc Cell Biol       Date:  2019-09

Review 9.  Targeted protein-omic methods are bridging the gap between proteomic and hypothesis-driven protein analysis approaches.

Authors:  Ronald J Hause; Hyung-Do Kim; Kin K Leung; Richard Baker Jones
Journal:  Expert Rev Proteomics       Date:  2011-10       Impact factor: 3.940

10.  Sequencing platform and library preparation choices impact viral metagenomes.

Authors:  Sergei A Solonenko; J César Ignacio-Espinoza; Adriana Alberti; Corinne Cruaud; Steven Hallam; Kostas Konstantinidis; Gene Tyson; Patrick Wincker; Matthew B Sullivan
Journal:  BMC Genomics       Date:  2013-05-10       Impact factor: 3.969

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