Literature DB >> 20211127

Preview. The incredible expanding ancestor of eukaryotes.

Eugene V Koonin1.   

Abstract

Comparing the genome sequences of free-living organisms in the five eukaryotic supergroups enables predictions to be made about the genome of the last common ancestor of eukaryotes. The genome sequence of the amoeboflagellate Naegleria gruberi reported by Fritz-Laylin et al. (2010) reveals the surprising complexity of this unicellular organism and, by inference, of the last common eukaryotic ancestor. (c) 2010 Elsevier Inc. All rights reserved.

Entities:  

Year:  2010        PMID： 20211127      PMCID： PMC3293451          DOI： 10.1016/j.cell.2010.02.022

Source DB:  PubMed          Journal:  Cell        ISSN： 0092-8674            Impact factor:   41.582


  10 in total

1.  Complex spliceosomal organization ancestral to extant eukaryotes.

Authors:  Lesley Collins; David Penny
Journal:  Mol Biol Evol       Date:  2005-01-19       Impact factor: 16.240

Review 2.  Eukaryotic evolution, changes and challenges.

Authors:  T Martin Embley; William Martin
Journal:  Nature       Date:  2006-03-30       Impact factor: 49.962

3.  Genomics. Deep questions in the tree of life.

Authors:  Patrick J Keeling
Journal:  Science       Date:  2007-09-28       Impact factor: 47.728

Review 4.  Horizontal gene transfer in eukaryotic evolution.

Authors:  Patrick J Keeling; Jeffrey D Palmer
Journal:  Nat Rev Genet       Date:  2008-08       Impact factor: 53.242

5.  The genome of Naegleria gruberi illuminates early eukaryotic versatility.

Authors:  Lillian K Fritz-Laylin; Simon E Prochnik; Michael L Ginger; Joel B Dacks; Meredith L Carpenter; Mark C Field; Alan Kuo; Alex Paredez; Jarrod Chapman; Jonathan Pham; Shengqiang Shu; Rochak Neupane; Michael Cipriano; Joel Mancuso; Hank Tu; Asaf Salamov; Erika Lindquist; Harris Shapiro; Susan Lucas; Igor V Grigoriev; W Zacheus Cande; Chandler Fulton; Daniel S Rokhsar; Scott C Dawson
Journal:  Cell       Date:  2010-03-05       Impact factor: 41.582

6.  Distinguishing protein-coding and noncoding genes in the human genome.

Authors:  Michele Clamp; Ben Fry; Mike Kamal; Xiaohui Xie; James Cuff; Michael F Lin; Manolis Kellis; Kerstin Lindblad-Toh; Eric S Lander
Journal:  Proc Natl Acad Sci U S A       Date:  2007-11-26       Impact factor: 11.205

7.  Comparative genomics, evolution and origins of the nuclear envelope and nuclear pore complex.

Authors:  Ben J Mans; Vivek Anantharaman; L Aravind; Eugene V Koonin
Journal:  Cell Cycle       Date:  2004-12-20       Impact factor: 4.534

8.  Streamlining and large ancestral genomes in Archaea inferred with a phylogenetic birth-and-death model.

Authors:  Miklós Csurös; István Miklós
Journal:  Mol Biol Evol       Date:  2009-06-30       Impact factor: 16.240

9.  Eukaryotic large nucleo-cytoplasmic DNA viruses: clusters of orthologous genes and reconstruction of viral genome evolution.

Authors:  Natalya Yutin; Yuri I Wolf; Didier Raoult; Eugene V Koonin
Journal:  Virol J       Date:  2009-12-17       Impact factor: 4.099

10.  A comprehensive evolutionary classification of proteins encoded in complete eukaryotic genomes.

Authors:  Eugene V Koonin; Natalie D Fedorova; John D Jackson; Aviva R Jacobs; Dmitri M Krylov; Kira S Makarova; Raja Mazumder; Sergei L Mekhedov; Anastasia N Nikolskaya; B Sridhar Rao; Igor B Rogozin; Sergei Smirnov; Alexander V Sorokin; Alexander V Sverdlov; Sona Vasudevan; Yuri I Wolf; Jodie J Yin; Darren A Natale
Journal:  Genome Biol       Date:  2004-01-15       Impact factor: 13.583
  10 in total
  32 in total

1.  Sculpting the endomembrane system in deep time: high resolution phylogenetics of Rab GTPases.

Authors:  Marek Elias; Andrew Brighouse; Carme Gabernet-Castello; Mark C Field; Joel B Dacks
Journal:  J Cell Sci       Date:  2012-02-24       Impact factor: 5.285

2.  New organelles by gene duplication in a biophysical model of eukaryote endomembrane evolution.

Authors:  Rohini Ramadas; Mukund Thattai
Journal:  Biophys J       Date:  2013-06-04       Impact factor: 4.033

Review 3.  Condensins: universal organizers of chromosomes with diverse functions.

Authors:  Tatsuya Hirano
Journal:  Genes Dev       Date:  2012-08-01       Impact factor: 11.361

4.  The relative ages of eukaryotes and akaryotes.

Authors:  David Penny; Lesley J Collins; Toni K Daly; Simon J Cox
Journal:  J Mol Evol       Date:  2014-09-02       Impact factor: 2.395

Review 5.  Sterol 14alpha-demethylase (CYP51) as a therapeutic target for human trypanosomiasis and leishmaniasis.

Authors:  Galina I Lepesheva; Michael R Waterman
Journal:  Curr Top Med Chem       Date:  2011       Impact factor: 3.295

Review 6.  Archaea and the origin of eukaryotes.

Authors:  Laura Eme; Anja Spang; Jonathan Lombard; Courtney W Stairs; Thijs J G Ettema
Journal:  Nat Rev Microbiol       Date:  2017-11-10       Impact factor: 60.633

7.  CMF22 is a broadly conserved axonemal protein and is required for propulsive motility in Trypanosoma brucei.

Authors:  HoangKim T Nguyen; Jaspreet Sandhu; Gerasimos Langousis; Kent L Hill
Journal:  Eukaryot Cell       Date:  2013-07-12

8.  An unusual transmembrane helix in the endoplasmic reticulum ubiquitin ligase Doa10 modulates degradation of its cognate E2 enzyme.

Authors:  Stefan G Kreft; Mark Hochstrasser
Journal:  J Biol Chem       Date:  2011-04-05       Impact factor: 5.157

9.  Thousands of rab GTPases for the cell biologist.

Authors:  Yoan Diekmann; Elsa Seixas; Marc Gouw; Filipe Tavares-Cadete; Miguel C Seabra; José B Pereira-Leal
Journal:  PLoS Comput Biol       Date:  2011-10-13       Impact factor: 4.475

10.  The origin and early evolution of eukaryotes in the light of phylogenomics.

Authors:  Eugene V Koonin
Journal:  Genome Biol       Date:  2010-05-05       Impact factor: 13.583
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