Literature DB >> 20210425

Spectral areas and ratios classifier algorithm for pancreatic tissue classification using optical spectroscopy.

Malavika Chandra, James Scheiman, Diane Simeone, Barbara McKenna, Julianne Purdy, Mary-Ann Mycek.   

Abstract

Pancreatic adenocarcinoma is one of the leading causes of cancer death, in part because of the inability of current diagnostic methods to reliably detect early-stage disease. We present the first assessment of the diagnostic accuracy of algorithms developed for pancreatic tissue classification using data from fiber optic probe-based bimodal optical spectroscopy, a real-time approach that would be compatible with minimally invasive diagnostic procedures for early cancer detection in the pancreas. A total of 96 fluorescence and 96 reflectance spectra are considered from 50 freshly excised tissue sites-including human pancreatic adenocarcinoma, chronic pancreatitis (inflammation), and normal tissues-on nine patients. Classification algorithms using linear discriminant analysis are developed to distinguish among tissues, and leave-one-out cross-validation is employed to assess the classifiers' performance. The spectral areas and ratios classifier (SpARC) algorithm employs a combination of reflectance and fluorescence data and has the best performance, with sensitivity, specificity, negative predictive value, and positive predictive value for correctly identifying adenocarcinoma being 85, 89, 92, and 80%, respectively.

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Year:  2010        PMID: 20210425      PMCID: PMC2839796          DOI: 10.1117/1.3314900

Source DB:  PubMed          Journal:  J Biomed Opt        ISSN: 1083-3668            Impact factor:   3.170


  9 in total

Review 1.  The combined use of fluorescence, reflectance, and light-scattering spectroscopy for evaluating dysplasia in Barrett's esophagus.

Authors:  Irene Georgakoudi; Michael S Feld
Journal:  Gastrointest Endosc Clin N Am       Date:  2004-07

2.  Combined reflectance and fluorescence spectroscopy for in vivo detection of cervical pre-cancer.

Authors:  Sung K Chang; Yvette N Mirabal; Edward Neely Atkinson; Dennis Cox; Anais Malpica; Michele Follen; Rebecca Richards-Kortum
Journal:  J Biomed Opt       Date:  2005 Mar-Apr       Impact factor: 3.170

3.  Diagnosing breast cancer using diffuse reflectance spectroscopy and intrinsic fluorescence spectroscopy.

Authors:  Zoya Volynskaya; Abigail S Haka; Kate L Bechtel; Maryann Fitzmaurice; Robert Shenk; Nancy Wang; Jon Nazemi; Ramachandra R Dasari; Michael S Feld
Journal:  J Biomed Opt       Date:  2008 Mar-Apr       Impact factor: 3.170

4.  Quantitative molecular sensing in biological tissues: an approach to non-invasive optical characterization.

Authors:  Malavika Chandra; Karthik Vishwanath; Greg D Fichter; Elly Liao; Scott J Hollister; Mary-Ann Mycek
Journal:  Opt Express       Date:  2006-06-26       Impact factor: 3.894

5.  Comparison of endoscopic ultrasound-guided fine needle aspiration for focal pancreatic lesions in patients with normal parenchyma and chronic pancreatitis.

Authors:  Annette Fritscher-Ravens; Lars Brand; W Trudo Knöfel; Christoph Bobrowski; Theodoros Topalidis; Frank Thonke; Andreas de Werth; Nib Soehendra
Journal:  Am J Gastroenterol       Date:  2002-11       Impact factor: 10.864

6.  Optical spectroscopy detects histological hallmarks of pancreatic cancer.

Authors:  Robert H Wilson; Malavika Chandra; James Scheiman; Diane Simeone; Barbara McKenna; Julianne Purdy; Mary-Ann Mycek
Journal:  Opt Express       Date:  2009-09-28       Impact factor: 3.894

7.  Probing pancreatic disease using tissue optical spectroscopy.

Authors:  Malavika Chandra; James Scheiman; David Heidt; Diane Simeone; Barbara McKenna; Mary-Ann Mycek
Journal:  J Biomed Opt       Date:  2007 Nov-Dec       Impact factor: 3.170

Review 8.  Preoperative tissue diagnosis for tumours of the pancreas.

Authors:  W Hartwig; L Schneider; M K Diener; F Bergmann; M W Büchler; J Werner
Journal:  Br J Surg       Date:  2009-01       Impact factor: 6.939

9.  Spectroscopic detection and evaluation of morphologic and biochemical changes in early human oral carcinoma.

Authors:  Markus G Müller; Tulio A Valdez; Irene Georgakoudi; Vadim Backman; Cesar Fuentes; Sadru Kabani; Nora Laver; Zimmern Wang; Charles W Boone; Ramachandra R Dasari; Stanley M Shapshay; Michael S Feld
Journal:  Cancer       Date:  2003-04-01       Impact factor: 6.860

  9 in total
  7 in total

1.  Characterizing human pancreatic cancer precursor using quantitative tissue optical spectroscopy.

Authors:  Seung Yup Lee; William R Lloyd; Malavika Chandra; Robert H Wilson; Barbara McKenna; Diane Simeone; James Scheiman; Mary-Ann Mycek
Journal:  Biomed Opt Express       Date:  2013-11-14       Impact factor: 3.732

2.  Tissue Classification Using Optical Spectroscopy Accurately Differentiates Cancer and Chronic Pancreatitis.

Authors:  Robert H Wilson; Malavika Chandra; James M Scheiman; Seung Yup Lee; Oliver E Lee; Barbara J McKenna; Diane M Simeone; Jeremy M G Taylor; Mary-Ann Mycek
Journal:  Pancreas       Date:  2017-02       Impact factor: 3.327

3.  Needle-compatible miniaturized optoelectronic sensor for pancreatic cancer detection.

Authors:  Seung Yup Lee; Julia M Pakela; Kyounghwan Na; Jiaqi Shi; Barbara J McKenna; Diane M Simeone; Euisik Yoon; James M Scheiman; Mary-Ann Mycek
Journal:  Sci Adv       Date:  2020-11-20       Impact factor: 14.136

4.  In vivo optical spectroscopy for improved detection of pancreatic adenocarcinoma: a feasibility study.

Authors:  William R Lloyd; Robert H Wilson; Seung Yup Lee; Malavika Chandra; Barbara McKenna; Diane Simeone; James Scheiman; Mary-Ann Mycek
Journal:  Biomed Opt Express       Date:  2013-12-02       Impact factor: 3.732

5.  Photon-tissue interaction model enables quantitative optical analysis of human pancreatic tissues.

Authors:  Robert H Wilson; Malavika Chandra; Leng-Chun Chen; William R Lloyd; James Scheiman; Diane Simeone; Julianne Purdy; Barbara McKenna; Mary-Ann Mycek
Journal:  Opt Express       Date:  2010-10-11       Impact factor: 3.894

6.  Instrumentation to rapidly acquire fluorescence wavelength-time matrices of biological tissues.

Authors:  William R Lloyd; Robert H Wilson; Ching-Wei Chang; Gregory D Gillispie; Mary-Ann Mycek
Journal:  Biomed Opt Express       Date:  2010-08-10       Impact factor: 3.732

7.  Nonlinear optical microscopy for histology of fresh normal and cancerous pancreatic tissues.

Authors:  Wenyan Hu; Gang Zhao; Chunyou Wang; Jungang Zhang; Ling Fu
Journal:  PLoS One       Date:  2012-05-24       Impact factor: 3.240

  7 in total

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