Literature DB >> 20208174

Crystallization and preliminary X-ray crystallographic study of 1-deoxy-D-xylulose 5-phosphate reductoisomerase from Plasmodium falciparum.

Tomonobu Umeda1, Nobutada Tanaka, Yoshio Kusakabe, Masayuki Nakanishi, Yukio Kitade, Kazuo T Nakamura.   

Abstract

The nonmevalonate pathway of isoprenoid biosynthesis present in Plasmodium falciparum is known to be an effective target for antimalarial drugs. The second enzyme of the nonmevalonate pathway, 1-deoxy-D-xylulose 5-phosphate reductoisomerase (DXR), catalyzes the transformation of 1-deoxy-D-xylulose 5-phosphate (DXP) to 2-C-methyl-D-erythritol 4-phosphate (MEP). For crystallographic studies, DXR from the human malaria parasite P. falciparum (PfDXR) was overproduced in Escherichia coli, purified and crystallized using the hanging-drop vapour-diffusion method in the presence of NADPH. X-ray diffraction data to 1.85 A resolution were collected from a monoclinic crystal form belonging to space group C2 with unit-cell parameters a = 168.89, b = 59.65, c = 86.58 A, beta = 117.8 degrees. Structural analysis by molecular replacement is in progress.

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Year:  2010        PMID: 20208174      PMCID: PMC2833050          DOI: 10.1107/S1744309110001739

Source DB:  PubMed          Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun        ISSN: 1744-3091


  18 in total

Review 1.  The discovery of a mevalonate-independent pathway for isoprenoid biosynthesis in bacteria, algae and higher plants.

Authors:  M Rohmer
Journal:  Nat Prod Rep       Date:  1999-10       Impact factor: 13.423

2.  Crystal structure of 1-deoxy-D-xylulose 5-phosphate reductoisomerase complexed with cofactors: implications of a flexible loop movement upon substrate binding.

Authors:  Shunsuke Yajima; Takamasa Nonaka; Tomohisa Kuzuyama; Haruo Seto; Kanju Ohsawa
Journal:  J Biochem       Date:  2002-03       Impact factor: 3.387

3.  Automated refinement of protein models.

Authors:  V S Lamzin; K S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  1993-01-01

4.  Crystal structure of 1-deoxy-d-xylulose-5-phosphate reductoisomerase from Zymomonas mobilis at 1.9-A resolution.

Authors:  Stefano Ricagno; Sigrid Grolle; Stephanie Bringer-Meyer; Hermann Sahm; Ylva Lindqvist; Gunter Schneider
Journal:  Biochim Biophys Acta       Date:  2004-04-08

5.  The 1.9 A resolution structure of Mycobacterium tuberculosis 1-deoxy-D-xylulose 5-phosphate reductoisomerase, a potential drug target.

Authors:  Lena M Henriksson; Christofer Björkelid; Sherry L Mowbray; Torsten Unge
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-06-20

6.  Structures of Mycobacterium tuberculosis 1-deoxy-D-xylulose-5-phosphate reductoisomerase provide new insights into catalysis.

Authors:  Lena M Henriksson; Torsten Unge; Jens Carlsson; Johan Aqvist; Sherry L Mowbray; T Alwyn Jones
Journal:  J Biol Chem       Date:  2007-05-09       Impact factor: 5.157

7.  Structural basis of fosmidomycin action revealed by the complex with 2-C-methyl-D-erythritol 4-phosphate synthase (IspC). Implications for the catalytic mechanism and anti-malaria drug development.

Authors:  Stefan Steinbacher; Johannes Kaiser; Wolfgang Eisenreich; Robert Huber; Adelbert Bacher; Felix Rohdich
Journal:  J Biol Chem       Date:  2003-03-05       Impact factor: 5.157

8.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

9.  The crystal structure of E.coli 1-deoxy-D-xylulose-5-phosphate reductoisomerase in a ternary complex with the antimalarial compound fosmidomycin and NADPH reveals a tight-binding closed enzyme conformation.

Authors:  Aengus Mac Sweeney; Roland Lange; Roberta P M Fernandes; Henk Schulz; Glenn E Dale; Alice Douangamath; Philip J Proteau; Christian Oefner
Journal:  J Mol Biol       Date:  2005-01-07       Impact factor: 5.469

10.  Fosmidomycin-clindamycin for the treatment of Plasmodium falciparum malaria.

Authors:  Steffen Borrmann; Saadou Issifou; Gilbert Esser; Ayola A Adegnika; Michael Ramharter; Pierre-Blaise Matsiegui; Sunny Oyakhirome; Dénise P Mawili-Mboumba; Michel A Missinou; Jürgen F J Kun; Hassan Jomaa; Peter G Kremsner
Journal:  J Infect Dis       Date:  2004-09-21       Impact factor: 5.226

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  8 in total

1.  Crystal structure of Brucella abortus deoxyxylulose-5-phosphate reductoisomerase-like (DRL) enzyme involved in isoprenoid biosynthesis.

Authors:  Jordi Pérez-Gil; Bárbara M Calisto; Christoph Behrendt; Thomas Kurz; Ignacio Fita; Manuel Rodríguez-Concepción
Journal:  J Biol Chem       Date:  2012-03-22       Impact factor: 5.157

2.  Inhibition Studies on Enzymes Involved in Isoprenoid Biosynthesis: Focus on Two Potential Drug Targets: DXR and IDI-2 Enzymes.

Authors:  Jérôme de Ruyck; Johan Wouters; C Dale Poulter
Journal:  Curr Enzym Inhib       Date:  2011-07

Review 3.  Biochemistry of the non-mevalonate isoprenoid pathway.

Authors:  Tobias Gräwert; Michael Groll; Felix Rohdich; Adelbert Bacher; Wolfgang Eisenreich
Journal:  Cell Mol Life Sci       Date:  2011-07-09       Impact factor: 9.261

4.  Mechanistic binding insights for 1-deoxy-D-Xylulose-5-Phosphate synthase, the enzyme catalyzing the first reaction of isoprenoid biosynthesis in the malaria-causing protists, Plasmodium falciparum and Plasmodium vivax.

Authors:  Matthew R Battistini; Christopher Shoji; Sumit Handa; Leonid Breydo; David J Merkler
Journal:  Protein Expr Purif       Date:  2015-12-15       Impact factor: 1.650

Review 5.  Isoprenoid precursor biosynthesis offers potential targets for drug discovery against diseases caused by apicomplexan parasites.

Authors:  William N Hunter
Journal:  Curr Top Med Chem       Date:  2011       Impact factor: 3.295

6.  Molecular basis of fosmidomycin's action on the human malaria parasite Plasmodium falciparum.

Authors:  Tomonobu Umeda; Nobutada Tanaka; Yoshio Kusakabe; Masayuki Nakanishi; Yukio Kitade; Kazuo T Nakamura
Journal:  Sci Rep       Date:  2011-06-14       Impact factor: 4.379

Review 7.  Molecular docking as a popular tool in drug design, an in silico travel.

Authors:  Jerome de Ruyck; Guillaume Brysbaert; Ralf Blossey; Marc F Lensink
Journal:  Adv Appl Bioinform Chem       Date:  2016-06-28

Review 8.  Exploring Drug Targets in Isoprenoid Biosynthetic Pathway for Plasmodium falciparum.

Authors:  Tabish Qidwai; Farrukh Jamal; Mohd Y Khan; Bechan Sharma
Journal:  Biochem Res Int       Date:  2014-04-23
  8 in total

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